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AT2G17975.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : zinc finger (Ran-binding) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
zinc finger (Ran-binding) family protein; FUNCTIONS IN: binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RanBP2-type (InterPro:IPR001876); BEST Arabidopsis thaliana protein match is: Ran BP2/NZF zinc finger-like superfamily protein (TAIR:AT2G26695.1); Has 1281 Blast hits to 744 proteins in 145 species: Archae - 0; Bacteria - 0; Metazoa - 342; Fungi - 88; Plants - 606; Viruses - 0; Other Eukaryotes - 245 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410YNCKeggNOG:KOG4198EMBL:AC006201EMBL:BT015337
EMBL:BT015844EMBL:CP002685EnsemblPlants:AT2G17975EnsemblPlants:AT2G17975.1
entrez:816309Gene3D:4.10.1060.10GeneID:816309GO:GO:0008270
Gramene:AT2G17975.1hmmpanther:PTHR23111hmmpanther:PTHR23111:SF37HOGENOM:HOG000006291
InterPro:IPR001876KEGG:ath:AT2G17975OMA:ANEWDNKPfam:PF00641
Pfscan:PS50199PhylomeDB:Q8S8K1PIR:T00827PROSITE:PS01358
PROSITE:PS50199Proteomes:UP000006548RefSeq:NP_179388.1scanprosite:PS01358
SMART:SM00547SMR:Q8S8K1STRING:3702.AT2G17975.1SUPFAM:SSF90209
TAIR:AT2G17975UniGene:At.40073UniGene:At.46292UniProt:Q8S8K1
Coordinates (TAIR10) chr2:-:7822238..7823970
Molecular Weight (calculated) 30237.60 Da
IEP (calculated) 8.63
GRAVY (calculated) -0.71
Length 268 amino acids
Sequence (TAIR10)
(BLAST)
001: MGDGREGDWE CLGCRNRNYA FRSFCNRCKQ PRLIMDNNTS PNSKWLPRIG DWICTGCTNN NYASREKCKK CGQSKEVAAL SALAIPGASL QTHLHYFTRG
101: PESHDQPGSL LAFSNATNQA SVHKEWRSGD WICRCGFHNY SSRIQCKKCN EIAPLALGTK RLASEALAHE WDSKRLNQGY TSMQTQSAIY ASFPGMSLGR
201: VSNWQLPLPF LQQHSTPALL GMGVKQWRDG DWMCTNCKNH NYASRAECNR CKTTRDILDQ DITPTEQS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)