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AT2G17972.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; Has 34 Blast hits to 34 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J3P2eggNOG:ENOG4112CYPEMBL:AC006201EMBL:AK118100EMBL:BT005480EMBL:CP002685EnsemblPlants:AT2G17972
EnsemblPlants:AT2G17972.1entrez:816308GeneID:816308GO:GO:0009507GO:GO:0009535GO:GO:0016021Gramene:AT2G17972.1
hmmpanther:PTHR36347hmmpanther:PTHR36347:SF1IntAct:Q8S8K0KEGG:ath:AT2G17972OMA:RTLSINCPhylomeDB:Q8S8K0Proteomes:UP000006548
RefSeq:NP_565430.1STRING:3702.AT2G17972.1TAIR:AT2G17972TMHMM:TMhelixUniGene:At.40073UniGene:At.46292UniProt:Q8S8K0
Coordinates (TAIR10) chr2:+:7821624..7822100
Molecular Weight (calculated) 18009.80 Da
IEP (calculated) 10.31
GRAVY (calculated) -0.55
Length 158 amino acids
Sequence (TAIR10)
(BLAST)
001: MKSLHFLAPN STIINLKQQS YTKTKFQLHR SNRRTLSINC VNSGGDEEKI TQPLDGVEIR FKRGSRRKMR EEGSGEGGGQ SGKKKETVQK PWEEMTLNEK
101: ALELYVGEKG LLFWLNKLAY ASIYIVIGGW IFFRFVGPAF NLYQLDTPPL DPKNILKG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)