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AT2G17970.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT4G36090.3); Has 213 Blast hits to 213 proteins in 60 species: Archae - 0; Bacteria - 4; Metazoa - 58; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410INB3eggNOG:ENOG410Y0ISEMBL:AC006201EMBL:AK175991
EMBL:BT010563EMBL:CP002685EnsemblPlants:AT2G17970EnsemblPlants:AT2G17970.1
entrez:816307ExpressionAtlas:Q9SL49Gene3D:2.60.120.590GeneID:816307
GO:GO:0009506GO:GO:0016491Gramene:AT2G17970.1hmmpanther:PTHR31447
hmmpanther:PTHR31447:SF1HOGENOM:HOG000015189InterPro:IPR005123InterPro:IPR027450
OMA:RMDESKRPfam:PF13532Pfscan:PS51471PhylomeDB:Q9SL49
PIR:F84558PIR:T00828PROSITE:PS51471Proteomes:UP000006548
RefSeq:NP_179387.1SMR:Q9SL49STRING:3702.AT2G17970.1SUPFAM:SSF51197
TAIR:AT2G17970UniGene:At.40074UniProt:Q9SL49
Coordinates (TAIR10) chr2:-:7819116..7821276
Molecular Weight (calculated) 57430.30 Da
IEP (calculated) 6.33
GRAVY (calculated) -0.81
Length 507 amino acids
Sequence (TAIR10)
(BLAST)
001: MENDPFLRQY QPSELKIASE FLTNWLPFLS KDLCKDCNHL LSNRIRSLDP AHCSNNTDKV DGECKTGSCS VVENMGSERA SNNVDDNYDE KSENGEDCDN
101: HSLGSWKGSE IVFGSFPEDF SSVLQSRPAV VETASPRMRW ADMAQEDEFD EEEEEEEEER DSSRKGFDAS SMKTPEKPKL SRDQRENLRL INVKRKKDFI
201: CLERVKGKIV NVLDGLELHT GVFSAVEQKR IVDQVYQLQE KGRRGELKKR TFTAPHKWMR GKGRETIQFG CCYNYAPDRA GNPPGILQRE EVDPLPHLFK
301: VIIRKLIKWH VLPPTCVPDS CIVNIYDEGD CIPPHIDNHD FLRPFCTISF LSECDILFGS NLKVEGPGDF SGSYSIPLPV GSVLVLNGNG ADVAKHCVPA
401: VPTKRISITF RKMDESKRPV WFTPEPDLQG IEPLPLDLNR SGSTSRFSRL NNHNGTNQRG HGRRGGGNGY DSRGYYNPER SSEHNDSGDW PSSQRRGMPR
501: PSRRNYG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)