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AT2G17880.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Chaperone DnaJ-domain superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Chaperone DnaJ-domain superfamily protein; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623); BEST Arabidopsis thaliana protein match is: Chaperone DnaJ-domain superfamily protein (TAIR:AT4G36040.1); Has 19677 Blast hits to 19677 proteins in 3133 species: Archae - 135; Bacteria - 8632; Metazoa - 3284; Fungi - 1660; Plants - 1836; Viruses - 5; Other Eukaryotes - 4125 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0484eggNOG:KOG0712EMBL:AF378865EMBL:AK227181EMBL:AY086227EMBL:AY091675EMBL:CP002685
EnsemblPlants:AT2G17880EnsemblPlants:AT2G17880.1entrez:816298Gene3D:1.10.287.110GeneID:816298GO:GO:0009507Gramene:AT2G17880.1
hmmpanther:PTHR24078hmmpanther:PTHR24078:SF166HOGENOM:HOG000283406IntAct:O48828InterPro:IPR001623KEGG:ath:AT2G17880OMA:HISATYT
Pfam:PF00226Pfscan:PS50076PhylomeDB:O48828PIR:T00836PRINTS:PR00625PROSITE:PS50076Proteomes:UP000006548
RefSeq:NP_179378.1SMART:SM00271SMR:O48828STRING:3702.AT2G17880.1SUPFAM:SSF46565TAIR:AT2G17880UniGene:At.24450
UniProt:O48828
Coordinates (TAIR10) chr2:-:7767176..7767658
Molecular Weight (calculated) 17748.60 Da
IEP (calculated) 9.20
GRAVY (calculated) -0.51
Length 160 amino acids
Sequence (TAIR10)
(BLAST)
001: MLSSSPTFFA TPFLSSSSSS SPSFSSTSPP SRISRISPSL STTTASYTCA EDLPRLRQIP QRFSATASLY EILEIPVGST SQEIKSAYRR LARICHPDVA
101: RNSRDNSSAD DFMKIHAAYC TLSDPEKRAV YDRRTLLRSR PLTAGYGSYG GRNWETDQCW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)