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AT2G17840.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28611809 (2017): cytosol
  • PMID:27122571 (2016): mitochondrion
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:15308754 (2004): plasma membrane
  • PMID:14506206 (2003): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Senescence/dehydration-associated protein-related
Curator
Summary (TAIR10)
Identified as drought-inducible gene by differential hybridization. Upregulated by high light, drought, cold and salt stress determined by microarray analysis.
Computational
Description (TAIR10)
EARLY-RESPONSIVE TO DEHYDRATION 7 (ERD7); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to water deprivation, response to high light intensity, response to salt stress, response to cold; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Senescence/spartin-associated (InterPro:IPR009686); BEST Arabidopsis thaliana protein match is: Senescence/dehydration-associated protein-related (TAIR:AT4G35985.1); Has 250 Blast hits to 250 proteins in 67 species: Archae - 0; Bacteria - 0; Metazoa - 66; Fungi - 39; Plants - 134; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IEUSeggNOG:ENOG410ZEPMEMBL:AF325067EMBL:AF428331EMBL:AY081319EMBL:BT001230EMBL:CP002685
EnsemblPlants:AT2G17840EnsemblPlants:AT2G17840.1entrez:816293GeneID:816293GO:GO:0005886GO:GO:0009409GO:GO:0009414
GO:GO:0009644GO:GO:0009651Gramene:AT2G17840.1hmmpanther:PTHR21068hmmpanther:PTHR21068:SF22HOGENOM:HOG000239897InterPro:IPR009686
KEGG:ath:AT2G17840KO:K19366OMA:EIVERQCPfam:PF06911PhylomeDB:O48832PIR:T00840Proteomes:UP000006548
RefSeq:NP_179374.1STRING:3702.AT2G17840.1TAIR:AT2G17840tair10-symbols:ERD7UniGene:At.19461UniGene:At.40094UniProt:O48832
Coordinates (TAIR10) chr2:-:7755923..7757798
Molecular Weight (calculated) 49003.00 Da
IEP (calculated) 5.08
GRAVY (calculated) -0.29
Length 452 amino acids
Sequence (TAIR10)
(BLAST)
001: MESSGDKQTS SLYPTVDTSN PEAPINPSSS SSTNNLYPSL DMNDLARNLF PEQPETSSIP VSAPPAATEE VILKISGAIL HLIDKSYSVE LACGDLEIIR
101: IVQGENVVAV LASVSDEIQW PLTKDENSVK VDESHYFFTL RPTKEISHDS SDEEDGDGGK NTNEMLNYGL TIASKGQEHL LVELEKILED YSSFSVQEVS
201: EEAKEAGEKV LDVTVARETS PVELTGERKE IVERQCSAYW TTLAPNVEDY SGKAAKLIAT GSGHLIKGIL WCGDVTMDRL IWGNGFMKRR LSKAEKESEV
301: HPDTLKRIRR VKRMTKMTES VANSILSGVL KVSGFFTSSV ANTKVGKKFF SLLPGEVILA SLDGFNKVCD AVEVAGRNVM STSSTVTTEL VDHKYGGKAA
401: EATNEGLDAA GYALGTAWVA FKIRKAINPK SVLKPSTLAK TAIRSAASQK KA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)