AT2G17840.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.836 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Senescence/dehydration-associated protein-related | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Identified as drought-inducible gene by differential hybridization. Upregulated by high light, drought, cold and salt stress determined by microarray analysis. | ||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
EARLY-RESPONSIVE TO DEHYDRATION 7 (ERD7); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to water deprivation, response to high light intensity, response to salt stress, response to cold; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Senescence/spartin-associated (InterPro:IPR009686); BEST Arabidopsis thaliana protein match is: Senescence/dehydration-associated protein-related (TAIR:AT4G35985.1); Has 250 Blast hits to 250 proteins in 67 species: Archae - 0; Bacteria - 0; Metazoa - 66; Fungi - 39; Plants - 134; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:7755923..7757798 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 49003.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.08 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.29 | ||||||||||||||||||||||||||||||||||||
| Length | 452 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MESSGDKQTS SLYPTVDTSN PEAPINPSSS SSTNNLYPSL DMNDLARNLF PEQPETSSIP VSAPPAATEE VILKISGAIL HLIDKSYSVE LACGDLEIIR 101: IVQGENVVAV LASVSDEIQW PLTKDENSVK VDESHYFFTL RPTKEISHDS SDEEDGDGGK NTNEMLNYGL TIASKGQEHL LVELEKILED YSSFSVQEVS 201: EEAKEAGEKV LDVTVARETS PVELTGERKE IVERQCSAYW TTLAPNVEDY SGKAAKLIAT GSGHLIKGIL WCGDVTMDRL IWGNGFMKRR LSKAEKESEV 301: HPDTLKRIRR VKRMTKMTES VANSILSGVL KVSGFFTSSV ANTKVGKKFF SLLPGEVILA SLDGFNKVCD AVEVAGRNVM STSSTVTTEL VDHKYGGKAA 401: EATNEGLDAA GYALGTAWVA FKIRKAINPK SVLKPSTLAK TAIRSAASQK KA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)