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AT2G17790.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 1.000
ASURE: golgi
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25641898 (2015): plasma membrane
  • PMID:21826108 (2012): Golgi trans-Golgi network multivesicular body
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : VPS35 homolog A
Curator
Summary (TAIR10)
Encodes a protein with similarity to yeast VPS35 which encodes a component of the retromer involved in retrograde endosomal transport. Mutants partially suppress the loss of VTI11 function in Arabidopsis and restores gravitropism in the double mutant.
Computational
Description (TAIR10)
VPS35 homolog A (VPS35A); CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting-associated protein 35 (InterPro:IPR005378); BEST Arabidopsis thaliana protein match is: VPS35 homolog B (TAIR:AT1G75850.1); Has 618 Blast hits to 509 proteins in 212 species: Archae - 0; Bacteria - 0; Metazoa - 194; Fungi - 224; Plants - 73; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XNXCeggNOG:KOG1107EMBL:AK229772EMBL:BT008553EMBL:BT008664EMBL:CP002685EnsemblPlants:AT2G17790
EnsemblPlants:AT2G17790.1entrez:816289GeneID:816289Genevisible:Q7X659GO:GO:0005770GO:GO:0005794GO:GO:0008565
GO:GO:0030904GO:GO:0031902GO:GO:0042147Gramene:AT2G17790.1hmmpanther:PTHR11099hmmpanther:PTHR11099:SF1HOGENOM:HOG000196946
InParanoid:Q7X659IntAct:Q7X659InterPro:IPR005378KEGG:ath:AT2G17790KO:K18468OMA:PWNSSTYPANTHER:PTHR11099
PaxDb:Q7X659Pfam:PF03635Pfam:Q7X659PhylomeDB:Q7X659PIRSF:PIRSF009375PRIDE:Q7X659PRO:PR:Q7X659
ProteinModelPortal:Q7X659Proteomes:UP000006548RefSeq:NP_179370.2SMR:Q7X659STRING:3702.AT2G17790.1TAIR:AT2G17790tair10-symbols:VPS35A
tair10-symbols:ZIP3UniGene:At.40097UniProt:Q7X659
Coordinates (TAIR10) chr2:+:7733685..7739344
Molecular Weight (calculated) 89498.20 Da
IEP (calculated) 4.88
GRAVY (calculated) -0.15
Length 787 amino acids
Sequence (TAIR10)
(BLAST)
001: MIADGSEDEE KWLAAGAAAF KQNAFYMQRA IDSNNLKDAL KYSAQMLSEL RTSKLSPHKY YDLYMRAFDE LRKLEIFFME ETRRGCSVIE LYELVQHAGN
101: ILPRLYLLCT AGSVYIKTKE APAKEILKDL VEMCRGIQHP LRGLFLRSYL AQISRDKLPD IGSEYEGDAD TVIDAVEFVL LNFTEMNKLW VRMQHQGPAR
201: EKERREKERG ELRDLVGKNL HVLSQLEGVD LDMYRDTVLP RVLEQIVNCR DEIAQYYLID CIIQVFPDEY HLQTLDVLLG ACPQLQASVD IMTVLSRLME
301: RLSNYAALNA EVLPYFLQVE AFSKLNNAIG KVIEAQEDMP ILSAVTLYSS LLKFTLHVHP DRLDYADQVL GSCVKQLSGK GKIDDTRATK ELVSLLSAPL
401: EKYNDVVTAL KLTNYPLVVE YLDTETKRIM ATVIVRSIMK NNTLITTAEK VEALFELIKG IINDLDEPQG LEVDEDDFQE EQNSVALLIH MLYNDDPEEM
501: FKIVNVLKKH FLTGGPKRLK FTIPPLVVST LKLIRRLPVE GDNPFGKEAS VTATKIFQFL NQIIEALPNV PSPDLAFRLY LQCAEAADKC DEEPIAYEFF
601: TQAYILYEEE ISDSKAQVTA LQLIIGTLQR MQVFGVENRD TLTHKATGYA AKLLKKPDQC RAVYACSHLF WLEDRETIQD GERVLLCLKR ALKIANSAQQ
701: VANTARGSTG SVTLFIEILN KYLYFYEKGV PQITVESVES LIKLIKNEES MPSDPSAESF FATTLEFMEF QKQKEGAIGE RYQAIKV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)