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AT2G17670.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 0.874
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G53700.1); Has 45396 Blast hits to 13729 proteins in 280 species: Archae - 5; Bacteria - 33; Metazoa - 451; Fungi - 602; Plants - 42971; Viruses - 0; Other Eukaryotes - 1334 (source: NCBI BLink).
Protein Annotations
BioGrid:1631eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AY085478EMBL:BT004095EMBL:BT005703EMBL:CP002685
EnsemblPlants:AT2G17670EnsemblPlants:AT2G17670.1entrez:816274ExpressionAtlas:Q84J71Gene3D:1.25.40.10GeneID:816274Genevisible:Q84J71
hmmpanther:PTHR24015hmmpanther:PTHR24015:SF454HOGENOM:HOG000238741InParanoid:Q84J71IntAct:Q84J71InterPro:IPR002885InterPro:IPR011990
InterPro:IPR033443KEGG:ath:AT2G17670OMA:VCNSKNLPaxDb:Q84J71Pfam:PF01535Pfam:PF13041Pfam:PF17177
Pfam:Q84J71Pfscan:PS51375PhylomeDB:Q84J71PIR:A84555PIR:T08865PRIDE:Q84J71PRO:PR:Q84J71
PROSITE:PS51375ProteinModelPortal:Q84J71Proteomes:UP000006548RefSeq:NP_565422.1SMR:Q84J71STRING:3702.AT2G17670.1TAIR:AT2G17670
TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.27997UniProt:Q84J71
Coordinates (TAIR10) chr2:+:7674420..7675811
Molecular Weight (calculated) 51410.90 Da
IEP (calculated) 8.32
GRAVY (calculated) -0.32
Length 463 amino acids
Sequence (TAIR10)
(BLAST)
001: MGKVPSSFRS MPANLLVRKT TPSPPAPPRD FRNRTAVGGD SAKLPQNTQA PREPSLRNPF KSPNLSDAKS LFNSIAATSR IPLDLKFHNS VLQSYGSIAV
101: VNDTVKLFQH ILKSQPNFRP GRSTFLILLS HACRAPDSSI SNVHRVLNLM VNNGLEPDQV TTDIAVRSLC ETGRVDEAKD LMKELTEKHS PPDTYTYNFL
201: LKHLCKCKDL HVVYEFVDEM RDDFDVKPDL VSFTILIDNV CNSKNLREAM YLVSKLGNAG FKPDCFLYNT IMKGFCTLSK GSEAVGVYKK MKEEGVEPDQ
301: ITYNTLIFGL SKAGRVEEAR MYLKTMVDAG YEPDTATYTS LMNGMCRKGE SLGALSLLEE MEARGCAPND CTYNTLLHGL CKARLMDKGM ELYEMMKSSG
401: VKLESNGYAT LVRSLVKSGK VAEAYEVFDY AVDSKSLSDA SAYSTLETTL KWLKKAKEQG LVP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)