AT2G17590.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.901 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Cysteine/Histidine-rich C1 domain family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Cysteine/Histidine-rich C1 domain family protein; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT2G17600.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:7651257..7653155 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 73475.90 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 6.76 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.35 | ||||||||||||||||||||||||||||
| Length | 632 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSYGQEETIS YGGEEELLIS SKVSGQEEEI CRLSHPSHPH TLSRRYGEHP PSGCFASSDS TFIRHSLYFY FFCTTCDLEF DQYCYLRPRK MTHPYHPQHP 101: LIFSVQDRQT GIIHDSDIHS YDVSSIIPED SSILGNCNWC GNDLRSFDFF YRCSICNFSL DSSCSQSFPL PTISNPKSHH HSLIFLPRPL LFPCDACGLV 201: EQWRPSYACF QCNYVVHKDC IDLPRVIKIT RHPHRLFYTP FLSPSTSSLC RLCYETVDIN YGQYTCNHDD CSFVVHSKCA THKNVWDGRE LEWEPEEFDE 301: TEDVAPFKKV GDDLIKYFCH DHHLKLEKYD RVRDMDKQCQ ACVLHVDSRH FYNCFQCDYV LHEVCANLPR KLDHGLHNHP LFLDPVPLNA WDSSNCSVCE 401: RVTVGFVYKC SKKRCTRIYQ QKRFQVDVRC ILVPDCFTHK SHEHPLFLPI HNYDTRLCNG CNHTGSTSSY YLQCTLCKVF LCYECATIPD KLHNKYDAVP 501: FSLCYGEVSD QTYWCEVCEG ILDPREWFYT CSKPYITIHR SCVFGWSAYM MPGYTLLFGN LSIKVICNSS NTRLMCHNCD NRCSSTVYLK LSNGIAICSY 601: QCLRDFNSKL DRSPRARYNV ELVNWYLAAL AD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)