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AT2G17580.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Polynucleotide adenylyltransferase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Polynucleotide adenylyltransferase family protein; FUNCTIONS IN: RNA binding, nucleotidyltransferase activity; INVOLVED IN: RNA processing; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Poly A polymerase, head domain (InterPro:IPR002646); BEST Arabidopsis thaliana protein match is: Polynucleotide adenylyltransferase family protein (TAIR:AT1G28090.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0617eggNOG:KOG2159EMBL:CP002685EnsemblPlants:AT2G17580
EnsemblPlants:AT2G17580.1entrez:816265GeneID:816265GO:GO:0003723
GO:GO:0006396GO:GO:0009507GO:GO:0016779Gramene:AT2G17580.1
hmmpanther:PTHR13734hmmpanther:PTHR13734:SF48InParanoid:F4INK3InterPro:IPR002646
InterPro:IPR032828KEGG:ath:AT2G17580ncoils:CoilOMA:NCTLAEG
PaxDb:F4INK3Pfam:PF01743Pfam:PF12627PRIDE:F4INK3
ProteinModelPortal:F4INK3Proteomes:UP000006548RefSeq:NP_179349.2SMR:F4INK3
STRING:3702.AT2G17580.1SUPFAM:SSF81301SUPFAM:SSF81891TAIR:AT2G17580
UniGene:At.40128UniProt:F4INK3
Coordinates (TAIR10) chr2:+:7646507..7650066
Molecular Weight (calculated) 85428.40 Da
IEP (calculated) 9.68
GRAVY (calculated) -0.45
Length 757 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGFIKRKGN VFFHSQALAA VYSKLQRSNC TLAEGFMEKC SSIRQVIDED INSVDTSKWK KVRASDAGIK NSMIPESSMN VLRLLRRQGF DAYLVGGCVR
101: DLILNRVPKD YDVITTADLK QIRRLFHRAQ VIGKRFPICH VWMGGSIIEV SSFDTVAHSD SDLEKSKEKS GVSLDTKANK NNSLFKMYSG WDIKDCKRWR
201: NSLQRDFTIN SLFYNPFDFT IYDYANGMED LTDLKLRTLV PAHLSFKEDC ARILRGLRIA ARLGLSLSKD VKTAIPEFVS SVANLDQFRL IMEMNYMLAY
301: GAAAPSILLL MKFKLLHVLL PFQAAYLDQA SKTSLSSSLM LVRLFSNMDK LVSCDQPADP KLWIAVLAFH IALVRNPQEA IVVRAFAALL YHGNWSKAVE
401: FAREHETSVI GYAPEVSKSS RKRSDEDLAE AVSEFTCLLK DTQYVLTDKE ALREALYLYP DFKFSGLVFI PKKKGRDVAE GFMRLSDVES YESQKEGFSI
501: DYVLLGKGNP CEVRFVLGKI ILDTITEGTV IEPLNSVKKK QSTRNHIVPA ACLEKKDELF VSKSSKEDNN NQTPVHDSNA SSVLKILKRT REDSEQNNDQ
601: ETEVCPRTPS GPAKNQDQSV VQMLKRRRSK EAPVSEPPKQ KTSKRSRSDD QEAVGSLSVP AKIQHQSNKH DTNAPICELP KQKTSKNHSK ESRKVKHNDL
701: PVKEIKEAKQ GFVSDKSMSD LLQVLEKSSQ QVSSKEENNS LSSEKTNRPR KLSSLFR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)