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AT2G17560.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : high mobility group B4
Curator
Summary (TAIR10)
Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif, the HMG-box domain. The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites. The HMGB proteins are involved in the assembly of nucleoprotein complexes. Can be phosphorylated by CK2alpha.
Computational
Description (TAIR10)
high mobility group B4 (HMGB4); FUNCTIONS IN: chromatin binding, structural constituent of chromatin, DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: chromatin assembly or disassembly; LOCATED IN: chromatin; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910); BEST Arabidopsis thaliana protein match is: high mobility group B5 (TAIR:AT4G35570.1); Has 4827 Blast hits to 4510 proteins in 564 species: Archae - 0; Bacteria - 0; Metazoa - 3518; Fungi - 343; Plants - 550; Viruses - 3; Other Eukaryotes - 413 (source: NCBI BLink).
Protein Annotations
BioGrid:1620eggNOG:COG5648eggNOG:KOG0381EMBL:AC007584EMBL:AF370150EMBL:AF370562EMBL:AK317044
EMBL:AY086336EMBL:AY150467EMBL:CP002685EMBL:F20020EMBL:Y14074EnsemblPlants:AT2G17560EnsemblPlants:AT2G17560.1
EnsemblPlants:AT2G17560.2entrez:816263Gene3D:1.10.30.10GeneID:816263Genevisible:Q42344GO:GO:0000785GO:GO:0003677
GO:GO:0003682GO:GO:0003700GO:GO:0005634GO:GO:0005737GO:GO:0005829GO:GO:0006333GO:GO:0006355
GO:GO:0030527hmmpanther:PTHR13711hmmpanther:PTHR13711:SF222HOGENOM:HOG000197860InParanoid:Q42344InterPro:IPR009071iPTMnet:Q42344
KEGG:ath:AT2G17560ncoils:CoilOMA:PYNDMANPaxDb:Q42344Pfam:PF00505Pfam:Q42344Pfscan:PS50118
PhylomeDB:Q42344PIR:F84553PIR:T51596PRIDE:Q42344PRO:PR:Q42344PROSITE:PS50118ProteinModelPortal:Q42344
Proteomes:UP000006548RefSeq:NP_001031364.2RefSeq:NP_001077909.1RefSeq:NP_179347.1SMART:SM00398SMR:Q42344STRING:3702.AT2G17560.1
SUPFAM:SSF47095TAIR:AT2G17560tair10-symbols:HMGB4tair10-symbols:NFD04tair10-symbols:NFD4UniGene:At.481UniProt:Q42344
Coordinates (TAIR10) chr2:-:7642486..7643468
Molecular Weight (calculated) 15420.70 Da
IEP (calculated) 8.83
GRAVY (calculated) -1.32
Length 138 amino acids
Sequence (TAIR10)
(BLAST)
001: MKGGESKAEA TSTDQRLKTR GRKAGKKTKK DPNQPKRPPS AFFVFLEDFR KEFNLANPNN KSVATVGKAA GARWKAMTDE DKAPYVAKAE SRKTEYIKNV
101: QQYNLKLASG TNREEDDSDK SKSEVDEAVS EEEAEDDD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)