suba logo
AT2G17440.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : plant intracellular ras group-related LRR 5
Curator
Summary (TAIR10)
Encodes PIRL5, a member of the Plant Intracellular Ras-group-related LRRs (Leucine rich repeat proteins). PIRLs are a distinct, plant-specific class of intracellular LRRs that likely mediate protein interactions, possibly in the context of signal transduction.
Computational
Description (TAIR10)
plant intracellular ras group-related LRR 5 (PIRL5); LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: plant intracellular ras group-related LRR 4 (TAIR:AT4G35470.1); Has 100264 Blast hits to 38283 proteins in 1358 species: Archae - 22; Bacteria - 10106; Metazoa - 37622; Fungi - 3439; Plants - 42778; Viruses - 28; Other Eukaryotes - 6269 (source: NCBI BLink).
Protein Annotations
eggNOG:COG4886eggNOG:KOG0619EMBL:AK228738EMBL:AY849575
EMBL:CP002685EnsemblPlants:AT2G17440EnsemblPlants:AT2G17440.1entrez:816250
Gene3D:3.80.10.10GeneID:816250Genevisible:Q5G5E0GO:GO:0005886
Gramene:AT2G17440.1hmmpanther:PTHR23155hmmpanther:PTHR23155:SF501HOGENOM:HOG000242894
InParanoid:Q5G5E0InterPro:IPR001611InterPro:IPR003591InterPro:IPR032675
iPTMnet:Q5G5E0KEGG:ath:AT2G17440OMA:ARNTKSQPaxDb:Q5G5E0
Pfam:PF00560Pfam:PF13855Pfam:Q5G5E0Pfscan:PS51450
PhylomeDB:Q5G5E0PIR:C84552PRIDE:Q5G5E0PRO:PR:Q5G5E0
PROSITE:PS51450ProteinModelPortal:Q5G5E0Proteomes:UP000006548RefSeq:NP_179336.1
SMART:SM00369SMR:Q5G5E0STRING:3702.AT2G17440.1SUPFAM:SSF52058
TAIR:AT2G17440tair10-symbols:PIRL5UniGene:At.40141UniProt:Q5G5E0
Coordinates (TAIR10) chr2:+:7571331..7573406
Molecular Weight (calculated) 58745.70 Da
IEP (calculated) 5.33
GRAVY (calculated) -0.24
Length 526 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSKEMVVEE IMRIHRSLPL RPEIDDVETA TSLIQNVEKE DRNRLEAIDK LVKTSSSEVP LELFNVFKEM KKSLVRFQST EQTREATKIL DLESVHVVFD
101: ELIQRASFCI ASPNSTTALP RSVPVPAPVV SSDEIPFKSK EIISRDDTFV KKAKSSFYSD GLLAPSKPQV LDSTLHQAKN VAGNDGEKLS LIKLASLIEV
201: SAKKATQELN LQHRLMDQLE WLPDSLGKLS SLVRLDLSEN CIMVLPATIG GLISLTRLDL HSNRIGQLPE SIGDLLNLVN LNLSGNQLSS LPSSFNRLIH
301: LEELDLSSNS LSILPESIGS LVSLKKLDVE TNNIEEIPHS ISGCSSMEEL RADYNRLKAL PEAVGKLSTL EILTVRYNNI RQLPTTMSSM ANLKELDVSF
401: NELESVPESL CYAKTLVKLN IGNNFANLRS LPGLIGNLEK LEELDMSNNQ IRFLPYSFKT LSNLRVLQTE QNPLEELPRD ITEKGAQAVV QYMNDLVEAR
501: NTKSQRTKPK KSWVNSICFF CKSSTN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)