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AT2G17380.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 0.991
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : associated protein 19
Curator
Summary (TAIR10)
Encodes clathrin assembly protein AP19.
Computational
Description (TAIR10)
associated protein 19 (AP19); FUNCTIONS IN: protein transporter activity; INVOLVED IN: intracellular protein transport, transport, vesicle-mediated transport, protein transport; LOCATED IN: membrane coat, mitochondrion, clathrin vesicle coat, clathrin coat of trans-Golgi network vesicle, clathrin adaptor complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Clathrin adaptor AP1, sigma subunit (InterPro:IPR015604), Adaptor protein complex, sigma subunit (InterPro:IPR016635), Clathrin adaptor, sigma subunit/coatomer, zeta subunit (InterPro:IPR000804), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: Clathrin adaptor complex small chain family protein (TAIR:AT4G35410.2); Has 1854 Blast hits to 1853 proteins in 251 species: Archae - 0; Bacteria - 0; Metazoa - 748; Fungi - 497; Plants - 257; Viruses - 0; Other Eukaryotes - 352 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5030eggNOG:KOG0934EMBL:AY085130EMBL:BT025619EMBL:CP002685EMBL:U92084EMBL:U92085
EnsemblPlants:AT2G17380EnsemblPlants:AT2G17380.1entrez:816245GeneID:816245Genevisible:Q8LEZ8GO:GO:0005794GO:GO:0006886
GO:GO:0008565GO:GO:0016192GO:GO:0030117GO:GO:0030665Gramene:AT2G17380.1hmmpanther:PTHR11753hmmpanther:PTHR11753:SF16
HOGENOM:HOG000185227InParanoid:Q8LEZ8InterPro:IPR000804InterPro:IPR011012InterPro:IPR016635InterPro:IPR022775KEGG:ath:AT2G17380
KO:K12394OMA:CCERAYPPANTHER:PTHR11753PaxDb:Q8LEZ8Pfam:PF01217Pfam:Q8LEZ8PhylomeDB:Q8LEZ8
PIR:E84551PIRSF:PIRSF015588PRIDE:Q8LEZ8PRO:PR:Q8LEZ8PROSITE:PS00989ProteinModelPortal:Q8LEZ8Proteomes:UP000006548
RefSeq:NP_565415.1scanprosite:PS00989SMR:Q8LEZ8STRING:3702.AT2G17380.1SUPFAM:SSF64356TAIR:AT2G17380tair10-symbols:AP19
UniGene:At.10509UniProt:Q8LEZ8
Coordinates (TAIR10) chr2:+:7553122..7554887
Molecular Weight (calculated) 18759.80 Da
IEP (calculated) 7.44
GRAVY (calculated) -0.03
Length 161 amino acids
Sequence (TAIR10)
(BLAST)
001: MIHFVLLVSR QGKVRLTKWY SPYTQKERSK VIRELSGVIL NRGPKLCNFI EWRGYKVVYK RYASLYFCMC IDEADNELEV LEIIHHYVEI LDRYFGSVCE
101: LDLIFNFHKA YYILDELLIA GELQESSKKT VARIISAQDQ LVEVAKEEAS SISNIIAQAT K
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)