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AT2G17250.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22550958 (2012): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : CCAAT-binding factor
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
EMBRYO DEFECTIVE 2762 (EMB2762); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CCAAT-binding factor (InterPro:IPR005612); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410YJPGeggNOG:KOG2154EMBL:CP002685EnsemblPlants:AT2G17250
EnsemblPlants:AT2G17250.1entrez:816230GeneID:816230GO:GO:0005654
GO:GO:0005730GO:GO:0006364GO:GO:0009793GO:GO:0016020
GO:GO:0030692GO:GO:0032040Gramene:AT2G17250.1hmmpanther:PTHR12455
hmmpanther:PTHR12455:SF0InParanoid:F4IMH3InterPro:IPR005612InterPro:IPR027193
iPTMnet:F4IMH3KEGG:ath:AT2G17250KO:K14771OMA:FTYISME
PANTHER:PTHR12455:SF0PaxDb:F4IMH3Pfam:PF03914PRIDE:F4IMH3
ProteinModelPortal:F4IMH3Proteomes:UP000006548RefSeq:NP_179316.2STRING:3702.AT2G17250.1
TAIR:AT2G17250tair10-symbols:EMB2762UniGene:At.28283UniProt:F4IMH3
Coordinates (TAIR10) chr2:+:7499573..7502957
Molecular Weight (calculated) 65352.00 Da
IEP (calculated) 8.41
GRAVY (calculated) -0.17
Length 577 amino acids
Sequence (TAIR10)
(BLAST)
001: MASILSKKQK KNEKYTLKEL KSLGHDLLTS RSHINNLPLL LTFVSPESPP QFVVESLLSL QSFFTPLLSQ LPPTSSSPSS TKTEDPEVVF KAWLRSKFDE
101: FVKLLLDVLV SQQSEDSLRG IVLGTLMEFV KLLNAGRFHS SIYHRLLDAI IHSEVDIEIF LDILTSKYFK YIDVRYFTYI SMEKFVKTLE ASVSADRTVI
201: ENNEAESDSK ESLELSVRKI YQVLSQIPPP EKQAEKSQHE MWSGSDESIS EKPTDKKKKT EKGDSTLLSP ATISKRMKLK FTKAWISFLR LPLPIDVYKE
301: VLASIHLTVI PHLSNPTMLC DFLTKSYDIG GVVSVMALSS LFILMTQHGL EYPFFYEKLY ALLVPSVFVA KHRAKFLQLL DACLKSSMLP AYLAASFTKK
401: LSRLSLSIPP AGSLVITALI YNLLRRNPTI NHLVQEIVEN ADEANTEAGE HNESQPKTIK KRKLGIDYFN NQESDPKKSG ALKSSLWEID TLRHHYCPPV
501: SRFISSLETN LTIRSKTTEM KIEDFCSGSY ATIFGDEIRR RVKQVPLAFY KTVPTSLFAD SDFPGWTFTI PQEEGTC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)