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AT2G17230.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 0.876
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : EXORDIUM like 5
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
EXORDIUM like 5 (EXL5); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphate-induced protein 1 (InterPro:IPR006766); BEST Arabidopsis thaliana protein match is: EXORDIUM like 1 (TAIR:AT2G35150.1); Has 402 Blast hits to 401 proteins in 25 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 398; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IEYCeggNOG:ENOG410Y43BEMBL:AC007127EMBL:AY058063EMBL:AY088390EMBL:AY090303EMBL:CP002685
EnsemblPlants:AT2G17230EnsemblPlants:AT2G17230.1entrez:816228GeneID:816228Genevisible:Q9SII5GO:GO:0005615GO:GO:0048046
Gramene:AT2G17230.1hmmpanther:PTHR31279hmmpanther:PTHR31279:SF9HOGENOM:HOG000239502InterPro:IPR006766KEGG:ath:AT2G17230OMA:VQWIWNP
PaxDb:Q9SII5Pfam:PF04674Pfam:Q9SII5PhylomeDB:Q9SII5PIR:F84549PRIDE:Q9SII5PRO:PR:Q9SII5
Proteomes:UP000006548RefSeq:NP_565409.1STRING:3702.AT2G17230.1TAIR:AT2G17230tair10-symbols:EXL5TMHMM:TMhelixUniGene:At.14401
UniGene:At.67733UniGene:At.71477UniProt:Q9SII5
Coordinates (TAIR10) chr2:-:7494892..7495983
Molecular Weight (calculated) 39642.80 Da
IEP (calculated) 7.60
GRAVY (calculated) -0.21
Length 363 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSPATTITF FFFFTLSSFF YITSSLQNNN NNKHTATVNS LNIPSAAAEI TLVNPKLPPR SLSLTSSKKF EGSSNLVHLR YHMGPVLSSS PINIYVIWYG
101: QWSRPHKSLI RDFLNSISDA KAPSPSVSEW WRTASLYTDQ TGSNVSRSVL IAGEYSDSKY SHGQHLTRLT IQEVIASAAR SASFPVDHKN GMYLVLTSHD
201: VTMQDFCRAV CGFHYFTFPS MVGYTMPYAW VGQSGKQCPE VCAYPFALPG YMGHGGPGEL RPPNGETGVD GMVSVIGHEL AEVVSNPLIN AWYAGEDPTA
301: PTEIGDLCEG LYGSGGGGGY IGQVMRDREG KTFNMNGKGG RKFLVQWIWN PNLKACSGPN SVD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)