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AT2G17200.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.905
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : ubiquitin family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DSK2; CONTAINS InterPro DOMAIN/s: Heat shock chaperonin-binding (InterPro:IPR006636), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Ubiquilin (InterPro:IPR015496), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: ubiquitin family protein (TAIR:AT2G17190.1); Has 15379 Blast hits to 7776 proteins in 854 species: Archae - 6; Bacteria - 3440; Metazoa - 5160; Fungi - 1735; Plants - 2506; Viruses - 174; Other Eukaryotes - 2358 (source: NCBI BLink).
Protein Annotations
BioGrid:1582eggNOG:ENOG410ISS6eggNOG:ENOG410XT8CEMBL:AC007127EMBL:AY035177EMBL:AY142486EMBL:CP002685
EnsemblPlants:AT2G17200EnsemblPlants:AT2G17200.1entrez:816225GeneID:816225Genevisible:Q9SII8GO:GO:0005634GO:GO:0005829
GO:GO:0031593Gramene:AT2G17200.1hmmpanther:PTHR10677hmmpanther:PTHR10677:SF22HOGENOM:HOG000234878InParanoid:Q9SII8IntAct:Q9SII8
InterPro:IPR000626InterPro:IPR006636InterPro:IPR009060InterPro:IPR015496InterPro:IPR015940InterPro:IPR029071KEGG:ath:AT2G17200
KO:K04523MINT:MINT-7308482OMA:VAVNIRCPANTHER:PTHR10677PaxDb:Q9SII8Pfam:PF00240Pfam:PF00627
Pfam:Q9SII8Pfscan:PS50030Pfscan:PS50053PhylomeDB:Q9SII8PIR:C84549PRIDE:Q9SII8PRO:PR:Q9SII8
PROSITE:PS50030PROSITE:PS50053ProteinModelPortal:Q9SII8Proteomes:UP000006548RefSeq:NP_179311.1SMART:SM00165SMART:SM00213
SMART:SM00727SMR:Q9SII8STRING:3702.AT2G17200.1SUPFAM:SSF46934SUPFAM:SSF54236TAIR:AT2G17200tair10-symbols:DSK2
UniGene:At.22593UniProt:Q9SII8
Coordinates (TAIR10) chr2:-:7482133..7485090
Molecular Weight (calculated) 58057.60 Da
IEP (calculated) 4.55
GRAVY (calculated) -0.47
Length 551 amino acids
Sequence (TAIR10)
(BLAST)
001: MGGEGDSSQP QSGEGEAVAV NIRCSNGTKF SVKTSLDSTV ESFKELVAQS SDVPANQQRL IYKGRILKDD QTLLSYGLQA DHTIHMVRGS APSSAPPPAP
101: AASQTTAPSV TRGVGSDNSS NLGGASPGES LFPGLGFNPL GGGNAMSGLF GAGLPDLVQT QQQLAQNPNM IRDMMNTPAI QNLMNNPEFM RSMIMNNPQM
201: RELVDRNPEL GHVLNDPSIL RQTLEAARNP ELMREMMRNT DRAMSNIESM PEGFNMLRRM YENVQEPLMN ATTMSGNAGN NTGSNPFAAL LGNQGVTTQG
301: SDASNNSSTP NAGTGTIPNA NPLPNPWGAT GGQTTAPGRT NVGGDARSPG LGGLGGLGSL GGLGGLGMLG ADSPLGATPD ASQLSQLLQN PAISQMMQSV
401: FSNPQYMNQL MSLNPQLRSM LDSNPQLREM MQNPDFLRQF SSPEMMQQMM TLQQSLSQNR NTASQDAGQT GAATGNNGGL DLLMNMFGSL GAGGLSGTNQ
501: SNVPPEERYA TQLQQLQEMG FYDRAENIRA LLATNGNVNA AVERLLGSIG Q
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)