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AT2G17190.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.619
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : ubiquitin family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ubiquitin family protein; CONTAINS InterPro DOMAIN/s: Heat shock chaperonin-binding (InterPro:IPR006636), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Ubiquilin (InterPro:IPR015496), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: ubiquitin family protein (TAIR:AT2G17200.1); Has 11292 Blast hits to 6186 proteins in 743 species: Archae - 6; Bacteria - 243; Metazoa - 4778; Fungi - 1683; Plants - 2450; Viruses - 166; Other Eukaryotes - 1966 (source: NCBI BLink).
Protein Annotations
BioGrid:1581eggNOG:COG5272eggNOG:KOG0010EMBL:AC007127EMBL:AF360159EMBL:AK228616EMBL:AY042828
EMBL:AY081450EMBL:AY113886EMBL:CP002685EnsemblPlants:AT2G17190EnsemblPlants:AT2G17190.1entrez:816224GeneID:816224
Genevisible:Q9SII9GO:GO:0005634GO:GO:0005829GO:GO:0031593Gramene:AT2G17190.1hmmpanther:PTHR10677hmmpanther:PTHR10677:SF22
HOGENOM:HOG000234878InParanoid:Q9SII9IntAct:Q9SII9InterPro:IPR000626InterPro:IPR006636InterPro:IPR009060InterPro:IPR015496
InterPro:IPR015940InterPro:IPR029071KEGG:ath:AT2G17190KO:K04523OMA:PPGINTDPANTHER:PTHR10677PaxDb:Q9SII9
Pfam:PF00240Pfam:PF00627Pfam:Q9SII9Pfscan:PS50030Pfscan:PS50053PhylomeDB:Q9SII9PIR:B84549
PRIDE:Q9SII9PRO:PR:Q9SII9PROSITE:PS50030PROSITE:PS50053ProteinModelPortal:Q9SII9Proteomes:UP000006548RefSeq:NP_565407.1
SMART:SM00165SMART:SM00213SMART:SM00727SMR:Q9SII9STRING:3702.AT2G17190.1SUPFAM:SSF46934SUPFAM:SSF54236
TAIR:AT2G17190UniGene:At.21851UniProt:Q9SII9
Coordinates (TAIR10) chr2:-:7478272..7481361
Molecular Weight (calculated) 57288.90 Da
IEP (calculated) 4.42
GRAVY (calculated) -0.44
Length 538 amino acids
Sequence (TAIR10)
(BLAST)
001: MGGEADSRQP LTAEGVAVAV NVRCSNGTKF SVTTSLDSTV ESFKELIAQN SDVPANQQRL IYKGRILKDD QTLLSYGLQA DHTVHMVRGF VPSSPSAPAA
101: NAGNQTTAPQ AVGSNDSSNL GGGESLFPGL GFNPLGGGNA MAGLFGSGLP DLEQAQQQLA QNPNMIREMM NTPAIQNLMN NPEFMRSMIM NNPQMRELVD
201: RNPELGHVLN DPSILRQTLE AARNPELMRE MMRNTDRAMS NIESMPEGFN MLRRMYENVQ EPLMNATTMS ENAGNNTSSN PFAALLGNQG VTTQGSDTSN
301: NISAPNAETG TPNANPLPNP WGATAGQTTA PGRTNAGLGG LGGLGGLGGL GMLGADSPLG ATPDASQLSQ ILQNPAMSQM MQSVLSNPQY MNQLMSLNPQ
401: LRSMLDMNPQ LREMMQNPDF LRQFSSPEMM QQMMSLQQSL FSQNRNTAGQ DPTQTGAATG TANNGGLDLL MNMFGSLGAG GLSGTNQPNV PPEERFATQL
501: QQLQEMGFYD RAENIRALLA TNGNVNAAVE RLLGSIGQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)