AT2G17080.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Arabidopsis protein of unknown function (DUF241) | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Arabidopsis protein of unknown function (DUF241); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF241, plant (InterPro:IPR004320); BEST Arabidopsis thaliana protein match is: Arabidopsis protein of unknown function (DUF241) (TAIR:AT2G17070.1); Has 750 Blast hits to 734 proteins in 87 species: Archae - 2; Bacteria - 37; Metazoa - 79; Fungi - 28; Plants - 534; Viruses - 2; Other Eukaryotes - 68 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:7433326..7434117 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 29639.20 Da | ||||||||||||||||||||||||
| IEP (calculated) | 7.10 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.54 | ||||||||||||||||||||||||
| Length | 263 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAVSFHVRSN SFPSRSHPQA AHVDEQLARL RSSEQASSSS SSSICQRLDN LQELHESLDK LISRPVTQQA LSQEHNKKAV EQLLDGSLRI LDLCNISKDA 101: LSEMKEGLME IQSILRRKRG DLSEEVKKYL TSRKSLKKSF QKVQKSLKVT QAEDNNDDTL AVFGEAEAIT LSLFDSLLSY MSGSKTCSKW SVVSKLMNKK 201: KVTCEAQENE FTKVDSEFQS EKTLKMDDVQ NLESCIQDLE DGLESLSKSL IKYRVSFLNI LGH |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)