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AT2G17020.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.897
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : F-box/RNI-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box/RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT1G55590.1); Has 4669 Blast hits to 2409 proteins in 221 species: Archae - 0; Bacteria - 377; Metazoa - 1922; Fungi - 539; Plants - 1335; Viruses - 3; Other Eukaryotes - 493 (source: NCBI BLink).
Protein Annotations
BioGrid:1562eggNOG:ENOG410XQ54eggNOG:KOG1947EMBL:AF367303EMBL:AY085127EMBL:AY133615EMBL:CP002685
EnsemblPlants:AT2G17020EnsemblPlants:AT2G17020.1entrez:816205Gene3D:3.80.10.10GeneID:816205Genevisible:Q9SDA8Gramene:AT2G17020.1
hmmpanther:PTHR24006hmmpanther:PTHR24006:SF449HOGENOM:HOG000239702InParanoid:Q9SDA8InterPro:IPR001810InterPro:IPR006553InterPro:IPR032675
KEGG:ath:AT2G17020OMA:ANMESICPaxDb:Q9SDA8Pfam:PF00646Pfam:Q9SDA8Pfscan:PS50181PhylomeDB:Q9SDA8
PIR:B84547PRIDE:Q9SDA8PRO:PR:Q9SDA8PROSITE:PS50181ProteinModelPortal:Q9SDA8Proteomes:UP000006548RefSeq:NP_565400.1
SMART:SM00367SMR:Q9SDA8STRING:3702.AT2G17020.1SUPFAM:SSF52047SUPFAM:SSF81383TAIR:AT2G17020UniGene:At.43872
UniProt:Q9SDA8
Coordinates (TAIR10) chr2:-:7396559..7398787
Molecular Weight (calculated) 72286.00 Da
IEP (calculated) 5.05
GRAVY (calculated) -0.04
Length 656 amino acids
Sequence (TAIR10)
(BLAST)
001: MATTTVVCGG GGDVEGCDGE RSLDLLPAAL LETIMTKLDV ASLCSLASTC KTLKSCVTRV LTFTPNFHIF NVSLSMETVR PLLFPNQQLS SLKLDCGRLG
101: NSAIDILVRP SLREISLHNC RDFSGDLISE IGRKCKDLRL LCLGSVAEKV GRSISRCALE DLLNGCSHLE VLALMFDLSL YLRPGDGRIF GLVSDRLTHL
201: ELGHITSRMM TQLLTSTEIS GQDSNRVTTS TVLQNVQRLR LSVDCITDAV VKAISKSLPS LIDLDIRDAP LEDPRQVSDL TDFGLHEINQ NGKLKHLSLI
301: RSQEFHPTYF RRVSDQGMLF LADKCLGMET ICLGGFCRVT DAGFKTILHS CASLSKFSIY HGPKLTDLVF HDILATTLSL SHVSLRRCHL LTDHAIQKLA
401: SSLKLENLDL RGCRNLRDET LTAVSHLPKL KVLLLDGADI SDTGLSYLKE GVLDSLVSLS VRGCRNLTDK FMSTLFDGSS KLALRELDLS NLPNLTDAAI
501: FALAKSGAPI TKLQLRECRL IGDASVMALA STRVYEDECP GSSLCLLDLY DCGGITQLSF KWLKKPFFPR LKWLGITGSV NRDIVDALAR RRPHLQVSCR
601: GEELGNDGED DWDSADIHQH IEAQEDELEQ WILGDEGDVE MEDAEDESEE DASEED
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)