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AT2G16980.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.983
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Major facilitator superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Major facilitator superfamily protein; FUNCTIONS IN: tetracycline transporter activity; INVOLVED IN: response to antibiotic, tetracycline transport, transmembrane transport; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Tetracycline resistance protein, TetA (InterPro:IPR001958), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT2G16970.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410ZVCAeggNOG:KOG2816EMBL:CP002685EnsemblPlants:AT2G16980EnsemblPlants:AT2G16980.1entrez:816201ExpressionAtlas:F4IMD8
GeneID:816201GO:GO:0005215GO:GO:0016021GO:GO:0055085Gramene:AT2G16980.1hmmpanther:PTHR23504hmmpanther:PTHR23504:SF36
InterPro:IPR001958InterPro:IPR011701InterPro:IPR020846KEGG:ath:AT2G16980PaxDb:F4IMD8Pfam:PF07690PhylomeDB:F4IMD8
PRIDE:F4IMD8PRINTS:PR01035ProteinModelPortal:F4IMD8Proteomes:UP000006548RefSeq:NP_179290.3SUPFAM:SSF103473TAIR:AT2G16980
TMHMM:TMhelixUniGene:At.40211UniProt:F4IMD8
Coordinates (TAIR10) chr2:+:7376376..7380525
Molecular Weight (calculated) 44377.70 Da
IEP (calculated) 7.88
GRAVY (calculated) 0.51
Length 408 amino acids
Sequence (TAIR10)
(BLAST)
001: MEVFRLGELR HLLVTVFLSG LAEYLIRPVM TDVTVAAVCS GLDDSCSLAV YLTGVQQVTV GMGTMVMMPV IGNLSDRYGI KAMLTLPMCL SVLPPAILGY
101: RRDTNFFYAF YVIKTLFDMV CQGTIDCLAN AYVAKNVHGT KRISMFGILA GVSSISGVCA SLSARFLSIA STFQVAAISL FIGLVYMRVF LKERLQDADD
201: DDEADSGGCR SHQEVHNGGD LKMLTEPILR DAPTKTHVFN SKYSSWKDMV SLINNSTILI QALVVTFFAT FSESGRGSAL MYFLKARFGF NKNDFAELFL
301: LVTIIGSISQ LFILPTLSST IGERKVLSTG LLMEFFNATC LSVAWSPWVP YAMTMLVPGA MFVMPSVCGI ASRQVGSSEQ GKVQGCISGV RAFAQVVAPF
401: VYSPLTGK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)