AT2G16960.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.500 nucleus 0.500 ASURE: cytosol,nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ARM repeat superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ARM repeat superfamily protein; FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: transportin 1 (TAIR:AT2G16950.2); Has 1191 Blast hits to 1183 proteins in 217 species: Archae - 0; Bacteria - 0; Metazoa - 517; Fungi - 331; Plants - 200; Viruses - 0; Other Eukaryotes - 143 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:7364683..7368963 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 61697.90 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.90 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.11 | ||||||||||||||||||||||||||||||||
| Length | 547 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAYEDDDETL LNEEEWNLRA CSAKFIGILA NVFGDEILLT LMPLIEAKLS KFDDETWKER EAAVFAFGAI AEGCNSFFYP HLIVAILRRL LDDQSPLVRR 101: ITCWTLYQFG TYVFEESNLE NSKLFTKVLH GFRFKLLDSN IWVQEAACLA LTTFEEDAGD KLVPHLEKIL QQLMRAFGKY QKRNLKVLLD AIRALADSVG 201: INLNKRAYIK ILIPPLVSTL EQISNSDKDV IPLLKCFTSI SKALEVGFAP FSWYVFERCM DILQLQQLAK VDHDFAGVQY DQNIVVCSLE FFSGLSKGLV 301: SGIESLVSQS NLRDMLLKCF MDETPDVRES AFALICHLTK SANFSGENLS AANNACKAIG ELAVKFLVKN KLVNDMNSMF QYPQEVSPIV TNVVYSLGMI 401: IQLGETLELK SLTTLVEYNA IELAMNSAIT VGILARIRPD LSARSIENFM KPWCMRLATL DDDSTKENAF QGLCEMVKVN PSRYVSSVAF ICLAIASWKD 501: MENKVIQSEF SKVLIGYKNM LGKNSWEECL SVLDPLAKER LAARYQV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)