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AT2G16940.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Splicing factor, CC1-like
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Splicing factor, CC1-like; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: mRNA processing; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Splicing factor, CC1-like (InterPro:IPR006509), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: Splicing factor, CC1-like (TAIR:AT5G09880.1); Has 101521 Blast hits to 50249 proteins in 1917 species: Archae - 88; Bacteria - 8818; Metazoa - 50214; Fungi - 11566; Plants - 10292; Viruses - 445; Other Eukaryotes - 20098 (source: NCBI BLink).
Protein Annotations
EMBL:AC005167EMBL:BT030339EMBL:CP002685EnsemblPlants:AT2G16940EnsemblPlants:AT2G16940.1entrez:816197ExpressionAtlas:Q9ZVW9
Gene3D:3.30.70.330GeneID:816197GO:GO:0000166GO:GO:0003723GO:GO:0005634GO:GO:0006397Gramene:AT2G16940.1
hmmpanther:PTHR24012hmmpanther:PTHR24012:SF388HOGENOM:HOG000236253InterPro:IPR000504InterPro:IPR003954InterPro:IPR006509InterPro:IPR012677
InterPro:IPR029123Pfam:PF00076Pfam:PF15519Pfscan:PS50102PhylomeDB:Q9ZVW9PIR:B84546PROSITE:PS50102
Proteomes:UP000006548RefSeq:NP_565399.1SMART:SM00360SMART:SM00361SMR:Q9ZVW9SUPFAM:SSF54928TAIR:AT2G16940
TIGRfam:TIGR01622TIGRFAMs:TIGR01622UniGene:At.40217UniProt:Q9ZVW9
Coordinates (TAIR10) chr2:-:7342869..7347052
Molecular Weight (calculated) 63102.40 Da
IEP (calculated) 6.81
GRAVY (calculated) -0.97
Length 561 amino acids
Sequence (TAIR10)
(BLAST)
001: MDFDEYEYLE KTVENPHLEN EVGNGGGDEK VKSEGKERSR SSRHRGDKKK ERDEDEDGRR SKRSRSHHRS RSRDRERDRH RSSREHRDRD REKDVDKEER
101: NGKDRERDRD KDRDSKGRDH EKDRSRRSRS RSERHRSQER EKSLEIEPKE RETKDRDRDR RRHKDKKEDK VEPEADPERD QRTVFAYQIA LRATERDVYE
201: FFSRAGKVRD VRIIMDRISR RSRGIGYVEF YDTMSVPMAI ALSGQPLLGQ PVMVKPSEAE KNLVQSTTAA AGAGGMLGPY SGGARRLYVG NLHINMSEDD
301: LRKVFESFGS VELVQVPRDE TGLCKGFGFV QFARLEDARN ALNLNGQLEI AGRAIKVSAV TDQTEVPEAG QTQTTGDLDD DDGGGLSLNA QSRALLMQKL
401: DRSGTASSTG LTTAASFNGG VSTISSLAAP ALVQGSFPAV AGLAGSGIIP GVIPAGFDPI GVPSECLLLK NMFDPSTETE DDFDEDIKED VKEECSKFGK
501: LNHIFVDKNS VGFVYLRFEN AQAAIGAQRA LHGRWFAGKM ITATYMTTEA YEAKFPESKV V
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)