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AT2G16930.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Ribosomal protein L27 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein L27 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular; CONTAINS InterPro DOMAIN/s: Ribosomal protein L27 (InterPro:IPR001684), Ribosomal protein L27, conserved site (InterPro:IPR018261); BEST Arabidopsis thaliana protein match is: Ribosomal protein L27 family protein (TAIR:AT5G15220.1); Has 7688 Blast hits to 7688 proteins in 2721 species: Archae - 0; Bacteria - 5395; Metazoa - 115; Fungi - 142; Plants - 116; Viruses - 0; Other Eukaryotes - 1920 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0211eggNOG:KOG4600EMBL:AC005167EMBL:AK118574EMBL:BT003674EMBL:CP002685EnsemblPlants:AT2G16930
EnsemblPlants:AT2G16930.1EnsemblPlants:AT2G16930.2EnsemblPlants:AT2G16930.3entrez:816196GeneID:816196GO:GO:0003735GO:GO:0005840
GO:GO:0006412Gramene:AT2G16930.1Gramene:AT2G16930.2Gramene:AT2G16930.3HAMAP:MF_00539hmmpanther:PTHR15893hmmpanther:PTHR15893:SF2
HOGENOM:HOG000111610IntAct:Q9ZVX0InterPro:IPR001684InterPro:IPR018261KEGG:ath:AT2G16930KO:K02899OMA:TESSGAM
PANTHER:PTHR15893Pfam:PF01016PhylomeDB:Q9ZVX0PIR:A84546PRINTS:PR00063ProDom:PD003114PROSITE:PS00831
Proteomes:UP000006548RefSeq:NP_001077904.1RefSeq:NP_565398.1RefSeq:NP_849961.1scanprosite:PS00831SMR:Q9ZVX0STRING:3702.AT2G16930.1
SUPFAM:SSF110324TAIR:AT2G16930TIGRfam:TIGR00062TIGRFAMs:TIGR00062UniGene:At.48483UniProt:Q9ZVX0
Coordinates (TAIR10) chr2:+:7341492..7342118
Molecular Weight (calculated) 16679.20 Da
IEP (calculated) 11.20
GRAVY (calculated) -0.34
Length 154 amino acids
Sequence (TAIR10)
(BLAST)
001: MNFLNSAASI CRRVSLRELI TEVPAYTGSS ISDGSSSGLS LVLKRWATKK TAGSTKNGRD SNPKFLGVKK FGGESVIPGN IIVRQRGTRF HPGDYVGIGK
101: DHTLFALKEG RVRFEKSKIT GRKWIHVDPI GGHVLHPIYT KAAAAKSTKL NTAS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)