AT2G16870.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 0.989 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Disease resistance protein (TIR-NBS-LRR class) family | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT1G64070.1); Has 20392 Blast hits to 15740 proteins in 660 species: Archae - 17; Bacteria - 1396; Metazoa - 2110; Fungi - 75; Plants - 16264; Viruses - 0; Other Eukaryotes - 530 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:7308077..7311686 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 125688.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.80 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.23 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1109 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MASSSSSRTW NYRVFASFHG PDVRKSFLSH FRKQFICNGI TMFDDQKIVR SQTIAPSLTQ GIRESKISIV ILSKNYASST WCLNELLEIL KCREDIGQIV 0101: MTVFYGVDPS DVRKQTGEFG TVFNKTCARR TEKERRNWSQ ALNVVGNIAG EHFLNWDNEA EMIEKIARDV SEKLNMTPSS DFDGMVGIEA HLKEMEVLLD 0201: FDYDGVKIVG IFGPAGIGKT TIARALHSLL LFKKFQLTCF VDNLRGSYPI GIDEYGLKLR LQEHLLSKIL NQDGMRISHL GAVKERLCDM KVLIILDDVN 0301: DVKQLEALAN DTTWFGPGSR VIVTTENKEI LQRHGIDNMY HVGFPSDEKA MEILCGYAFK QSSPRPGFNY LAQKVTWLCG NLPLGLRVVG SSLRGKKEDE 0401: WKSVIRRLDT IIDRDIEDVL RVGYESLHEN EQSLFLHIAV FFNCKDVDLV KAMLADDNLD IAHGLKILVN KSLIYISTTG EIRMHKLLQQ VGRQAINRQE 0501: PWKRLILTNA QEICYVLEND KGTGVVSGIS FDTSGISEVI LSNRALRRMS NLRFLSVYKT RHDGNNIMHI PEDMKFPPRL RLLHWEAYPS KSLPLGFCLE 0601: NLVELNMKDS QLEKLWEGTQ LLTNLKKMDL SRSVHLKELP DLSNATNLER LELCDCRALV ELPKSIGNLH KLENLVMANC ISLEVIPTHI NLASLEHITM 0701: TGCSRLKTFP DFSTNIERLL LIGTSVEEVP ASIRHWSSLS DFCIKNNEDL KSLTYFPEKV ELLDLSYTDI EKIPDCIKGF HGLKSLDVAG CRKLTSLPEL 0801: PMSLGLLVAL DCESLEIITY PLNTPSARLN FTNCFKLGEE SRRLIIQRCA TQFLDGYACL PGRVMPDEFN QRTSGNNSLN IRLSSASFKF KACVVISPNQ 0901: QQHSWEHTDI RCIVGSYNKV ICVEHPNEST RIQTEHLCIF HGSVSEVSSN EALFEFCIDA SNQFDNFKIL ECGVRILTNE PERSSKKTVS RGLRSHAKIL 1001: KACLHKRKQK KMIGYLLKEE FGLPRDNRII EVDEDNNNDH TVSLDSASDN VEGKEKPIDC WSWLCICFDL SNIVRNMGKL VLGKETTESI DGGVLHEYST 1101: RKDDDVTMG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)