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AT2G16860.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : GCIP-interacting family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
GCIP-interacting family protein; CONTAINS InterPro DOMAIN/s: mRNA splicing factor SYF2 (InterPro:IPR013260); Has 2586 Blast hits to 2013 proteins in 293 species: Archae - 27; Bacteria - 123; Metazoa - 700; Fungi - 265; Plants - 138; Viruses - 7; Other Eukaryotes - 1326 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XY86eggNOG:KOG2609EMBL:AC005167EMBL:AC005825EMBL:AY099601EMBL:AY128842EMBL:CP002685
EnsemblPlants:AT2G16860EnsemblPlants:AT2G16860.1entrez:816187GeneID:816187Gramene:AT2G16860.1hmmpanther:PTHR13264hmmpanther:PTHR13264:SF5
HOGENOM:HOG000190170InterPro:IPR013260KEGG:ath:AT2G16860KO:K12868OMA:DMEKYERPANTHER:PTHR13264Pfam:PF08231
PhylomeDB:Q9ZVX7PIR:B84545Proteomes:UP000006548RefSeq:NP_565396.1STRING:3702.AT2G16860.1TAIR:AT2G16860UniGene:At.12859
UniProt:Q9ZVX7
Coordinates (TAIR10) chr2:-:7304139..7305959
Molecular Weight (calculated) 35172.30 Da
IEP (calculated) 8.39
GRAVY (calculated) -1.36
Length 298 amino acids
Sequence (TAIR10)
(BLAST)
001: MVSERRVHPD CINASNPYHE CVEYCFKKIA EAKARFEKQN TGLAKVHEQT REPLDDKRIE EDSSEEEEEE EDNQEPQVDV TQLTGRQKKL FELRLKMNEA
101: RKSNQTDVGS EKKKMEAPTE TKGISKQKWL EGRKKKIGKL LDANGLDMTQ AYMLDTQEAA ESKYKKWEKE PTPAGWDVFN QKTLYNAYKK RTKNIQVDLE
201: EYNRMRAADP EFYREASSLQ YGKAPKTSQD KIDKMAKELL DREQKRQEFS RRRKFREEKD IDSINDRNEH FNKKIERAFG KYTLEIKNNL ERGTALPD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)