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AT2G16600.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : rotamase CYP 3
Curator
Summary (TAIR10)
Encodes cytosolic cyclophilin ROC3.
Computational
Description (TAIR10)
rotamase CYP 3 (ROC3); FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding, signal transduction; LOCATED IN: cytosol, chloroplast, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, conserved site (InterPro:IPR020892); BEST Arabidopsis thaliana protein match is: Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (TAIR:AT2G21130.1); Has 16363 Blast hits to 16328 proteins in 2676 species: Archae - 108; Bacteria - 6734; Metazoa - 2930; Fungi - 1383; Plants - 1279; Viruses - 4; Other Eukaryotes - 3925 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G16600-MONOMERBioCyc:ARA:GQT-394-MONOMERBioGrid:1518EC:5.2.1.8eggNOG:COG0652eggNOG:KOG0865EMBL:AC005825
EMBL:AY048215EMBL:AY086330EMBL:AY091694EMBL:CP002685EMBL:U40399EnsemblPlants:AT2G16600EnsemblPlants:AT2G16600.1
EnsemblPlants:AT2G16600.2entrez:816161ExpressionAtlas:Q38900Gene3D:2.40.100.10GeneID:816161Genevisible:Q38900GO:GO:0003755
GO:GO:0005794GO:GO:0005829GO:GO:0005886GO:GO:0006457GO:GO:0007165GO:GO:0009506GO:GO:0009507
GO:GO:0042277hmmpanther:PTHR11071hmmpanther:PTHR11071:SF264HOGENOM:HOG000065981InParanoid:Q38900IntAct:Q38900InterPro:IPR002130
InterPro:IPR020892InterPro:IPR024936InterPro:IPR029000iPTMnet:Q38900KEGG:ath:AT2G16600MINT:MINT-8064090OMA:YFDMTVG
PANTHER:PTHR11071PaxDb:Q38900Pfam:PF00160Pfam:Q38900Pfscan:PS50072PhylomeDB:Q38900PIR:S71219
PIRSF:PIRSF001467PRIDE:Q38900PRINTS:PR00153PRO:PR:Q38900PROSITE:PS00170PROSITE:PS50072ProteinModelPortal:Q38900
Proteomes:UP000006548Reactome:R-ATH-6781823Reactome:R-ATH-6782135Reactome:R-ATH-6782210RefSeq:NP_001077901.1RefSeq:NP_179251.1scanprosite:PS00170
SMR:Q38900STRING:3702.AT2G16600.1SUPFAM:SSF50891TAIR:AT2G16600tair10-symbols:ROC3UniGene:At.22516UniGene:At.24328
UniGene:At.67816UniProt:Q38900
Coordinates (TAIR10) chr2:+:7200862..7201383
Molecular Weight (calculated) 18493.00 Da
IEP (calculated) 8.63
GRAVY (calculated) -0.32
Length 173 amino acids
Sequence (TAIR10)
(BLAST)
001: MATNPKVYFD MTVGGKSAGR IVMELYADTT PETAENFRAL CTGERGIGKQ GKPLHYKGSS FHRVIPKFMC QGGDFTAGNG TGGESIYGSK FKDENFIKKH
101: TGPGILSMAN AGANTNGSQF FICTEKTSWL DGKHVVFGQV VEGLNVVRDI EKVGSDSGRT SKPVVIADCG QIS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)