AT2G16595.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Translocon-associated protein (TRAP), alpha subunit | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Translocon-associated protein (TRAP), alpha subunit; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, endoplasmic reticulum; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translocon-associated protein (TRAP), alpha subunit (InterPro:IPR005595); BEST Arabidopsis thaliana protein match is: Translocon-associated protein (TRAP), alpha subunit (TAIR:AT2G21160.1); Has 245 Blast hits to 245 proteins in 98 species: Archae - 0; Bacteria - 0; Metazoa - 135; Fungi - 29; Plants - 60; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:7198363..7200086 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 27408.80 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 4.84 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.09 | ||||||||||||||||||||||||||||
| Length | 251 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRTSFRLLFF AFLLLVSPFL KVALCQSDSE DSGFEVSDVG EEESDAEEVF GLELTSAPGI ETLCVFPKNS AKIIKAGVET ELLVGMKNDG QSNVDIVAVK 101: GSLHLPFDQN AVQNLTALSF SNASVPTSAQ ATLPYAFAVS KFLQAGAFDF VGTIIYEIDG KPYQSIFYNG TIEVVEDGPL FRMESVFLSG LLIFVIAFLA 201: IYIQNVLKHM TKKTKRAPKV EVGTATKDAS HDEWLEGTSY TQSSSKSKKK K |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)