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AT2G16485.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : nucleic acid binding;zinc ion binding;DNA binding
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
nucleic acid binding;zinc ion binding;DNA binding; FUNCTIONS IN: DNA binding, zinc ion binding, nucleic acid binding; INVOLVED IN: histone modification, transcription initiation; LOCATED IN: nucleus; EXPRESSED IN: guard cell, cultured cell; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Plus-3 domain, subgroup (InterPro:IPR018144), Zinc finger, PHD-type (InterPro:IPR001965), GYF (InterPro:IPR003169), SWIB/MDM2 domain (InterPro:IPR003121), Plus-3 (InterPro:IPR004343), SWIB domain (InterPro:IPR019835), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding (TAIR:AT3G51120.1); Has 38357 Blast hits to 25980 proteins in 1833 species: Archae - 670; Bacteria - 4778; Metazoa - 14464; Fungi - 4561; Plants - 3104; Viruses - 298; Other Eukaryotes - 10482 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111KSIeggNOG:KOG1081eggNOG:KOG1862eggNOG:KOG1946EMBL:AC007047EMBL:CP002685EMBL:DQ446507
EnsemblPlants:AT2G16485EnsemblPlants:AT2G16485.1entrez:816147Gene3D:1.10.245.10Gene3D:3.30.1490.40Gene3D:3.30.40.10Gene3D:4.10.1000.10
GeneID:816147Genevisible:Q9SIV5GO:GO:0003677GO:GO:0005634GO:GO:0006352GO:GO:0008270GO:GO:0010964
GO:GO:0016570GO:GO:0031047GO:GO:0032776GO:GO:0042393Gramene:AT2G16485.1hmmpanther:PTHR22884hmmpanther:PTHR22884:SF374
HOGENOM:HOG000215989InParanoid:Q9SIV5InterPro:IPR000571InterPro:IPR001965InterPro:IPR003121InterPro:IPR003169InterPro:IPR004343
InterPro:IPR011011InterPro:IPR013083InterPro:IPR019786InterPro:IPR019787InterPro:IPR019835iPTMnet:Q9SIV5KEGG:ath:AT2G16485
ncoils:CoilOMA:EIWKANEPaxDb:Q9SIV5Pfam:PF00642Pfam:PF02201Pfam:PF02213Pfam:PF03126
Pfam:Q9SIV5Pfscan:PS50016Pfscan:PS50103Pfscan:PS50829Pfscan:PS51360PIR:F84540PIR:G84540
PRIDE:Q9SIV5PRO:PR:Q9SIV5PROSITE:PS01359PROSITE:PS50016PROSITE:PS50103PROSITE:PS50829PROSITE:PS51360
ProteinModelPortal:Q9SIV5Proteomes:UP000006548RefSeq:NP_179241.4scanprosite:PS01359SMART:SM00151SMART:SM00249SMART:SM00444
SMART:SM00719STRING:3702.AT2G16485.1SUPFAM:0053761SUPFAM:SSF159042SUPFAM:SSF47592SUPFAM:SSF55277SUPFAM:SSF57903
TAIR:AT2G16485UniGene:At.40269UniProt:Q9SIV5
Coordinates (TAIR10) chr2:-:7137269..7145222
Molecular Weight (calculated) 195061.00 Da
IEP (calculated) 4.42
GRAVY (calculated) -0.84
Length 1773 amino acids
Sequence (TAIR10)
(BLAST)
0001: MDSDSERASL ESIKDNSECV HVSNEPNLTA TCVDSSVGEE GVTDVNSSAA VSELVPPEQG EGALLNSVPE ISERGIPVDV VSSVDGGGEE NAAFNIQEID
0101: SVGGDAAAVE EVPLKSSSVV GEGREEEAGA SIVKEEDFVA EANLSGDRLE ENKEVSMEEE PSSHELSVCE VNGVDSLNDE ENREVGEQIV CGSMGGEEIE
0201: SDLESKKEKV DVIEEETTAQ AASLVNAIEI PDDKEVACVA GFTEISSQDK GLDESGNGFL DEEPVKELQI GEGAKDLTDG DAKEGVDVTE DEMDIQVLKK
0301: SKEEEKVDST TELEIETMRL EVHDVATEMS DKTVISSAVV TQFTGETSND KETVMDDVKE DVDKDSEAGK SLDIHVPEAT EEVDTDVNYG VGIEKEGDGV
0401: GGAEEAGQTV DLEEIREENQ ELSKELAQVD ETKISEMSEV TETMIKDEDQ EKDDNMTDLA EDVENHRDSS VADIEEGRED HEDMGVTETQ KETVLGKVDR
0501: TKIAEVSEET DTRIEDEDQE KDDEMTDVAE DVKTHGDSSV ADIEEGRESQ EEMTETQEDS VMADEEPEEV EEENKSAGGK RKRGRNTKTV KGTGKKKEED
0601: VCFMCFDGGD LVLCDRRGCT KAYHPSCVDR DEAFFQTKGK WNCGWHLCSK CEKTATYLCY TCMFSLCKGC AKDAVFFCIR GNKGLCETCM ETVKLIERKQ
0701: QEKEPAQLDF NDKTSWEYLF KDYWIDLKTQ LSLSPEELDQ AKRPLKGHET NASKQGTASE TDYVTDGGSD SDSSPKKRKT RSRSKSGSAE KILSSGDKNL
0801: SDETMEWASK ELLDLVVHMR RGDRSFLPML EVQTLLLAYI KRYNLRDPRR KSQVICDSRL QNLFGKSHVG HFEMLNLLDS HFLKKEQNQA DDIQGDIVDT
0901: EEPNHVDVDE NLDHPVKSGK DKKRKTRKKN VRKGRQSNLD DFAAVDMHNI NLIYLRRSLV EDLLEDSTAF EEKVASAFVR LRISGNQKQD LYRLVQVVGT
1001: SKAPEPYKVG KKTTDYVLEI LNLDKTEVIS IDIISNQDFT EDECKRLKQS IKCGLINRLT VGDIQEKAIA LQEVRVKNLL EAEILRFSHL RDRASDMGRR
1101: KEYPYLLKLS NSLTMLTLRE CVEKLQLLKS PEERQRRLEE IPEIHADPKM DPDCESEDED EKEEKEKEKQ LRPRSSSFNR RGRDPISPRK GGFSSNESWT
1201: GTSNYSNTSA NRELSRSYSG RGSTGRGDYL GSSDDKVSDS MWTSAREREV QPSLGSEKPR SVSIPETPAR SSRAIAPPEL SPRIASEISM APPAVVSQPV
1301: PKSNDSEKIW HYKDPSGKVQ GPFSMAQLRK WNNTGYFPAK LEIWKANESP LDSVLLTDAL AGLFQKQTQA VDNSYMKAQV AAFSGQSSQS EPNLGFAARI
1401: APTTIEIPRN SQDTWSQGGS LPSPTPNQIT TPTAKRRNFE SRWSPTKPSP QSANQSMNYS VAQSGQSQTS RIDIPVVVNS AGALQPQTYP IPTPDPINVS
1501: VNHSATLHSP TPAGGKQSWG SMQTDHGGSN TPSSQNNSTS YGTPSPSVLP SQSQPGFPPS DSWKVAVPSQ PNAQAQAQWG MNMVNNNQNS AQPQAPANQN
1601: SSWGQGTVNP NMGWVGPAQT GVNVNWGGSS VPSTVQGITH SGWVAPVQGQ TQAYPNPGWG PTGHPQSQSQ SQVQAQAGTT GSGWMQPGQG IQSGNSNQNW
1701: GTQNQTAIPS GGSGGNQAGY WGNQQQSQNG DSGYGWNRQS GGQQNNFKGQ RVCKFFRENG HCRKGASCNY LHN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)