AT2G16380.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.885 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Sec14p-like phosphatidylinositol transfer family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Sec14p-like phosphatidylinositol transfer family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: intracellular; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), Cellular retinaldehyde binding/alpha-tocopherol transport (InterPro:IPR001071), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: Sec14p-like phosphatidylinositol transfer family protein (TAIR:AT4G34580.1); Has 2691 Blast hits to 2676 proteins in 232 species: Archae - 0; Bacteria - 0; Metazoa - 819; Fungi - 614; Plants - 876; Viruses - 0; Other Eukaryotes - 382 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:7085972..7088858 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 62863.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.16 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.56 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 547 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MADTKQDMEN SEDGRKLVKM SSLKQKAISA SNRFKNSFKK KTRRTSSKIV SVANTDDING DDYLSVEAFR QVLVLDDLLP PKHDDLHMML RFLRARKFDK 101: EKAKQMWSDM LQWRMDFGVD TIIEDFEFEE IDQVLKHYPQ GYHGVDKEGR PVYIERLGQI DANKLLQATT MDRYEKYHVK EFEKMFKIKF PSCSAAAKKH 201: IDQSTTIFDV QGVGLKNFNK SARELLQRLL KIDNDNYPET LNRMFIINAG PGFRLLWAPI KKFLDPKTTS KIHVLGNKYQ PKLLEAIDAS ELPYFFGGLC 301: TCADKGGCLR SDKGPWNDPE LLKIARNPEA RFSTISEEDY LLVEEGTSMS MVFEPLERNK MKTIEENVSE KHIDAVDKFM ALSLPPKPHL KTLRKGKEPQ 401: KKDDSFLVGG VIAFVMGIVA MLRLSKAVPR KLTDVALLTN SVYYEEAKMS KPNQDEVSAP PVSSSEYVIM VKRMAELEEK YKSLDSKSAD EALEKDDKLQ 501: AALNRVQVLE HELSETKKAL DETMVNQQGI LAYIEKKNKK KRMFFRF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)