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AT2G16280.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
endoplasmic reticulum 0.995
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23585652 (2013): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : 3-ketoacyl-CoA synthase 9
Curator
Summary (TAIR10)
Encodes KCS9, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).
Computational
Description (TAIR10)
3-ketoacyl-CoA synthase 9 (KCS9); FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity; INVOLVED IN: response to cold, response to light stimulus, very long-chain fatty acid metabolic process, response to osmotic stress, cuticle development; LOCATED IN: membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thiolase-like (InterPro:IPR016039), Very-long-chain 3-ketoacyl-CoA synthase (InterPro:IPR012392), 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal (InterPro:IPR013747), FAE1/Type III polyketide synthase-like protein (InterPro:IPR013601), Thiolase-like, subgroup (InterPro:IPR016038); BEST Arabidopsis thaliana protein match is: 3-ketoacyl-CoA synthase 4 (TAIR:AT1G19440.1); Has 4705 Blast hits to 4688 proteins in 1155 species: Archae - 0; Bacteria - 1679; Metazoa - 0; Fungi - 8; Plants - 2880; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G16280-MONOMERBioGrid:1483EC:2.3.1.199eggNOG:ENOG410IHMWeggNOG:ENOG410Y5VHEMBL:AC007047EMBL:AK226284
EMBL:CP002685EnsemblPlants:AT2G16280EnsemblPlants:AT2G16280.1entrez:816124Gene3D:3.40.47.10GeneID:816124Genevisible:Q9SIX1
GO:GO:0005789GO:GO:0006633GO:GO:0009409GO:GO:0009416GO:GO:0016021GO:GO:0016747Gramene:AT2G16280.1
gramene_pathway:2.3.1.-gramene_pathway:PWY-5080hmmpanther:PTHR31561hmmpanther:PTHR31561:SF15HOGENOM:HOG000238893InParanoid:Q9SIX1InterPro:IPR012392
InterPro:IPR013601InterPro:IPR013747InterPro:IPR016039iPTMnet:Q9SIX1KEGG:00061+2.3.1.180KEGG:00062+2.3.1.199KEGG:ath:AT2G16280
KO:K15397OMA:TMMAAREPANTHER:PTHR31561PaxDb:Q9SIX1Pfam:PF08392Pfam:PF08541Pfam:Q9SIX1
PhylomeDB:Q9SIX1PIR:F84538PIRSF:PIRSF036417PRIDE:Q9SIX1PRO:PR:Q9SIX1ProteinModelPortal:Q9SIX1Proteomes:UP000006548
RefSeq:NP_179223.1SMR:Q9SIX1STRING:3702.AT2G16280.1SUPFAM:SSF53901TAIR:AT2G16280tair10-symbols:KCS9TMHMM:TMhelix
UniGene:At.20689UniPathway:UPA00094UniProt:Q9SIX1
Coordinates (TAIR10) chr2:+:7051186..7052724
Molecular Weight (calculated) 57976.60 Da
IEP (calculated) 9.44
GRAVY (calculated) -0.10
Length 512 amino acids
Sequence (TAIR10)
(BLAST)
001: MEAANEPVNG GSVQIRTENN ERRKLPNFLQ SVNMKYVKLG YHYLITHLFK LCLVPLMAVL VTEISRLTTD DLYQIWLHLQ YNLVAFIFLS ALAIFGSTVY
101: IMSRPRSVYL VDYSCYLPPE SLQVKYQKFM DHSKLIEDFN ESSLEFQRKI LERSGLGEET YLPEALHCIP PRPTMMAARE ESEQVMFGAL DKLFENTKIN
201: PRDIGVLVVN CSLFNPTPSL SAMIVNKYKL RGNVKSFNLG GMGCSAGVIS IDLAKDMLQV HRNTYAVVVS TENITQNWYF GNKKAMLIPN CLFRVGGSAI
301: LLSNKGKDRR RSKYKLVHTV RTHKGAVEKA FNCVYQEQDD NGKTGVSLSK DLMAIAGEAL KANITTLGPL VLPISEQILF FMTLVTKKLF NSKLKPYIPD
401: FKLAFDHFCI HAGGRAVIDE LEKNLQLSQT HVEASRMTLH RFGNTSSSSI WYELAYIEAK GRMKKGNRVW QIAFGSGFKC NSAVWVALNN VKPSVSSPWE
501: HCIDRYPVKL DF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)