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AT2G16210.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Transcriptional factor B3 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transcriptional factor B3 family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: Transcriptional factor B3 family protein (TAIR:AT2G35310.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
EMBL:AC007134EMBL:AY247810EMBL:AY247811EMBL:AY924741EMBL:CP002685EnsemblPlants:AT2G16210EnsemblPlants:AT2G16210.1
entrez:816118Gene3D:2.40.330.10GeneID:816118Genevisible:Q5BPT7GO:GO:0003677GO:GO:0005634GO:GO:0006351
GO:GO:0006355hmmpanther:PTHR31920hmmpanther:PTHR31920:SF20HOGENOM:HOG000131629InParanoid:Q5BPT7InterPro:IPR003340InterPro:IPR015300
KEGG:ath:AT2G16210OMA:VKEYPLAPaxDb:Q5BPT7Pfam:PF02362Pfam:Q5BPT7Pfscan:PS50863PhylomeDB:Q5BPT7
PIR:H84537PRIDE:Q5BPT7PRO:PR:Q5BPT7PROSITE:PS50863ProteinModelPortal:Q5BPT7Proteomes:UP000006548RefSeq:NP_179217.2
RefSeq:NP_973471.1SMART:SM01019SUPFAM:SSF101936TAIR:AT2G16210UniGene:At.40304UniProt:Q5BPT7
Coordinates (TAIR10) chr2:-:7026996..7028993
Molecular Weight (calculated) 33218.70 Da
IEP (calculated) 10.67
GRAVY (calculated) -0.65
Length 291 amino acids
Sequence (TAIR10)
(BLAST)
001: MATNAGYLRC KEERKNESFF KVVQSINVSS ENKRALPHDF SRSFTDKELS RKMKIRAQWG NSWEVGISKN PRFYFMEKSG WEKFVRDNAL GNSELLTFTH
101: KGKMHFTVNI FKLDGKEMMQ PPQSRSFFAS SSRIKTEQEE NDIKEEVVVS SNRGQTTAAE SKGRKLNLGK RAAKESQSSK RTEKVVRARS DYAGASSSTA
201: AAFTILFKQG YLVFLRIPNS VSKDQVPDEK TVFKIHHPNG KKSWNVVYLE RFGAFSGGWR RVVKEYPLAV GDTCKFTFIK PKELLLVVSK P
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)