AT2G16040.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.889 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : hAT dimerisation domain-containing protein / transposase-related | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
hAT dimerisation domain-containing protein / transposase-related; FUNCTIONS IN: protein dimerization activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906); BEST Arabidopsis thaliana protein match is: hAT family dimerisation domain (TAIR:AT2G06500.1); Has 701 Blast hits to 553 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 491; Fungi - 0; Plants - 207; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:6976017..6977594 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 44122.90 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.44 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.15 | ||||||||||||||||||||||||||||||||
| Length | 382 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MIGGFNSDMK EHIRRANKGE IHCHFPSHKS QNELTELLAN DTKMMILKKI KDAKYFSVIL DSIPDVSRKE QMTFLIRCVD VSTCSPKIEE FFLTFLHIKD 101: KREYTDNPGH RSDVESLTES ETHGIGGFEF LFGMIIWYDL LAAVNIVSKS LQFEDMDLEV AISQLGGLVT YLKNYKETGF EKAKVESTQI AIEMKIAPVF 201: PKKSVKKKKQ FVEDVEKIDE SKIAEESFRI DYFINIMDQA IMCIEIRFEQ FQVYEQIFGF LFGVKRLKVA EDDELRTSCM KLEASLKHDV HSDVDGEDLF 301: MELKLLKDVL PKEITKPVEV LKFLKIMDSC YPNTWIAYRI LLTIPVSVAL AERTFSKLKL IKKYLRSTMS QERLNGLALI SV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)