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AT2G15970.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
ASURE: plasma membrane
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:15574830 (2004): plasma membrane
  • PMID:15539469 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : cold regulated 413 plasma membrane 1
Curator
Summary (TAIR10)
encodes an alpha form of a protein similar to the cold acclimation protein WCOR413 in wheat. Expression is induced by short-term cold-treatment, water deprivation, and abscisic acid treatment.
Computational
Description (TAIR10)
cold regulated 413 plasma membrane 1 (COR413-PM1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cold acclimation, cellular response to water deprivation, response to abscisic acid stimulus; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cold acclimation WCOR413 (InterPro:IPR008892); BEST Arabidopsis thaliana protein match is: Cold acclimation protein WCOR413 family (TAIR:AT4G37220.1); Has 153 Blast hits to 150 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 153; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:1451eggNOG:ENOG410IVQJeggNOG:ENOG4111SCFEMBL:AB044404EMBL:AC006438EMBL:AF283004EMBL:AY088558
EMBL:AY093767EMBL:AY143813EMBL:CP002685EnsemblPlants:AT2G15970EnsemblPlants:AT2G15970.1entrez:816092ExpressionAtlas:Q9XIM7
GeneID:816092Genevisible:Q9XIM7GO:GO:0005773GO:GO:0005886GO:GO:0009631GO:GO:0009737GO:GO:0016021
GO:GO:0042631hmmpanther:PTHR33596hmmpanther:PTHR33596:SF1HOGENOM:HOG000239742InParanoid:Q9XIM7InterPro:IPR008892OMA:WIGLAIC
PaxDb:Q9XIM7Pfam:PF05562Pfam:Q9XIM7PhylomeDB:Q9XIM7PIR:C84535PRIDE:Q9XIM7PRO:PR:Q9XIM7
ProteinModelPortal:Q9XIM7Proteomes:UP000006548RefSeq:NP_179196.1STRING:3702.AT2G15970.1TAIR:AT2G15970tair10-symbols:ATCOR413-PM1tair10-symbols:ATCYP19
tair10-symbols:COR413-PM1tair10-symbols:FL3-5A3tair10-symbols:WCOR413tair10-symbols:WCOR413-LIKETMHMM:TMhelixUniGene:At.22305UniGene:At.24347
UniProt:Q9XIM7
Coordinates (TAIR10) chr2:+:6950163..6951012
Molecular Weight (calculated) 21606.00 Da
IEP (calculated) 9.23
GRAVY (calculated) 0.81
Length 197 amino acids
Sequence (TAIR10)
(BLAST)
001: MPMKSLRNDH GTLKAMIGSD FNELTIAAKN LATHAFTLTG LGFGTSVLEW VASIAAIYLL VLDRTNWKTN MLTSLLIPYI FFSLPSLIFG IFRGEIGKWI
101: AFVAVVVQLF FPKHAREYLE LPVALVLLAV VAPNLIAGTF RDSWIGLAIC LGIGCYLLQE HIRASGGFRN AFTKANGISN TVGIICLVVF PVWALIF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)