AT2G15900.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.908 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Phox-associated domain;Phox-like;Sorting nexin, C-terminal | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Phox-associated domain;Phox-like;Sorting nexin, C-terminal; FUNCTIONS IN: phosphoinositide binding; INVOLVED IN: signal transduction, intracellular signaling pathway; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PX-associated, sorting nexin 13 (InterPro:IPR013996), Sorting nexin, C-terminal (InterPro:IPR013937), Phox-like (InterPro:IPR001683), Phox-associated domain (InterPro:IPR003114); BEST Arabidopsis thaliana protein match is: Phox-associated domain;Phox-like;Sorting nexin, C-terminal (TAIR:AT1G15240.2); Has 1078 Blast hits to 871 proteins in 164 species: Archae - 0; Bacteria - 0; Metazoa - 658; Fungi - 203; Plants - 141; Viruses - 2; Other Eukaryotes - 74 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:6927390..6932535 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 113724.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.70 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.46 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 994 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKAMETIQDL IEEAKVRAVW WCLCIFSVTY FLTHTSIYWW LNLPIAILIC GGARFFFNHF EFRWKVPATP RQSQLSYLEK KQLSVNDPRL SGIPPPPRWK 101: KKIDSPVVEA AINDFIDKIL NDFVVNLWYS LITPDKEAPE LIRAVIMDAL GEISVRVKEI NIVDLLTRDI VDLIGDHLES FRRNQAAIGT DVMKTLSSEE 201: RDERLKYHLM ASGELYPALV SPESEYKVLQ KIVAGILSVV LRPREAQCPL VRTIAREIVT CLVIQPLLNL ACPERINEVF EIIINLIKEG NFEQFTAEEQ 301: NVNSAPLSAF DSQAKNMNLT KAIEQKSPNI NDRHPDLHVQ QHSADWARSL EVATQRRTEV LRPENLENMW TKGRNYQKKE YKKSLKKGSS TGAKENAVAQ 401: LPPKVSTDKQ SQAQMAEEFS KSSLHDGGHQ IYEADVRKES RSDGNKNRLK RSNSTSDLNL RPETSLALLG VSEGPLITEF YTTDFIKHND NYISDNKSQS 501: IVLHKEGQHC LKLKCRVLGA YFEKQGSKSF AVYSIAVTDV ENKTWFVKRR YSNFERLHRQ LKEIPNYNLQ LPPKRIFSSS TEDAFVHRRC IQLDKYLQDL 601: LCIANVAEQH EVWDFLSAAS KNYSFGKSSS VMKTLAVNVD DAMDDIVRQF KGVSDGLMRK VVGSPLDEHD HAPTRHLSWS VNEISTQLSR ESATESMHSS 701: ISDTEDIDKL GENTQGEGRF DSEANGWHSD NELDSKYVPP RVVRRLGEPE SSPSEKENDF KAKSQVRGST DFQHADPLTA LVQNPHGIPE WMPPNVSVPI 801: LNLVDKVFQL NRRGWLRRQV FWISKQILQL VMEDAVDDLL MREICWLRNE DTIAQGIRWA QDILWPNGVF FTRLNDSQEA SDETDPSEKT YQMAGQLGGM 901: KVTKPSSFEQ QLEAFRRASE IKKFLFDGAP TALVSLVGHN QYRRCARDIF YFTQSNICIK QLTFAILELL LRSVFPELQD LLRDIRENPQ GRSE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)