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AT2G15740.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : C2H2-like zinc finger protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
C2H2-like zinc finger protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: leaf; EXPRESSED DURING: LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT2G18490.1); Has 58 Blast hits to 58 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).
Protein Annotations
EMBL:AB493548EMBL:AC006248EMBL:CP002685EnsemblPlants:AT2G15740EnsemblPlants:AT2G15740.1entrez:816068GeneID:816068
GO:GO:0003700GO:GO:0006355GO:GO:0046872Gramene:AT2G15740.1hmmpanther:PTHR24396HOGENOM:HOG000152437InterPro:IPR007087
InterPro:IPR015880KEGG:ath:AT2G15740OMA:FITSDHTPfscan:PS50157PhylomeDB:Q9ZQE0PIR:G84532PROSITE:PS00028
PROSITE:PS50157Proteomes:UP000006548RefSeq:NP_179176.1scanprosite:PS00028SMART:SM00355SMR:Q9ZQE0TAIR:AT2G15740
UniGene:At.66204UniProt:Q9ZQE0
Coordinates (TAIR10) chr2:-:6856746..6857735
Molecular Weight (calculated) 38005.10 Da
IEP (calculated) 8.58
GRAVY (calculated) -0.98
Length 329 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSMPNKFNP HCDDNNRGFS SIQMNQNSQM VHSRFITSDH TNHGDLFSSS PSFSCFHNSH ASSSSFGFQN SHVENHMMKR NIISDDNYFS ITNNPHFTRV
101: SFTQTITNKF TAIVPTNTLD AVQYDAQRVK RAMNPKTNIW NPIFSPPNTF DKQCEFLNPK PLNVIFPSQN SAYPQHLDMF SLSSKHNHDQ RVLQDGRSMK
201: KILKPTIFFE ATTDYIESQE NEKSNNDHND GRTHSLPYEK YGPYTCPKCN GVFNTSQKFA AHMSSHYKNE TSEEREQRIR AKNKRKFCKL NREINGEPQK
301: TKQEDVANNS EKSDDKTFQH LVVVKEELV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)