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AT2G15680.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Calcium-binding EF-hand family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), Recoverin (InterPro:IPR001125), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: EF hand calcium-binding protein family (TAIR:AT5G37770.1); Has 22221 Blast hits to 15732 proteins in 1476 species: Archae - 2; Bacteria - 203; Metazoa - 8340; Fungi - 5009; Plants - 5639; Viruses - 0; Other Eukaryotes - 3028 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5126eggNOG:KOG0027EMBL:AC006248EMBL:AY128375EMBL:BT006571EMBL:CP002685EnsemblPlants:AT2G15680
EnsemblPlants:AT2G15680.1entrez:816061Gene3D:1.10.238.10GeneID:816061Genevisible:Q9ZQE6GO:GO:0005509GO:GO:0005739
Gramene:AT2G15680.1hmmpanther:PTHR10891hmmpanther:PTHR10891:SF533HOGENOM:HOG000233018InParanoid:Q9ZQE6InterPro:IPR002048InterPro:IPR011992
InterPro:IPR018247iPTMnet:Q9ZQE6KEGG:ath:AT2G15680KO:K13448OMA:QPNADEMPaxDb:Q9ZQE6Pfam:PF13499
Pfam:Q9ZQE6Pfscan:PS50222PhylomeDB:Q9ZQE6PIR:A84532PRIDE:Q9ZQE6PRO:PR:Q9ZQE6PROSITE:PS00018
PROSITE:PS50222ProteinModelPortal:Q9ZQE6Proteomes:UP000006548RefSeq:NP_179170.1scanprosite:PS00018SMART:SM00054SMR:Q9ZQE6
STRING:3702.AT2G15680.1SUPFAM:SSF47473TAIR:AT2G15680UniGene:At.59377UniProt:Q9ZQE6
Coordinates (TAIR10) chr2:+:6831024..6831587
Molecular Weight (calculated) 21221.30 Da
IEP (calculated) 6.75
GRAVY (calculated) -0.51
Length 187 amino acids
Sequence (TAIR10)
(BLAST)
001: MSNVSFLELQ YKLSKNKMLR KPSRMFSRDR QSSGLSSPGP GGFSQPSVNE MRRVFSRFDL DKDGKISQTE YKVVLRALGQ ERAIEDVPKI FKAVDLDGDG
101: FIDFREFIDA YKRSGGIRSS DIRNSFWTFD LNGDGKISAE EVMSVLWKLG ERCSLEDCNR MVRAVDADGD GLVNMEEFIK MMSSNNV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)