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AT2G15440.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.274
plastid 0.244
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF579)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF579); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF579 (InterPro:IPR021148), Conserved hypothetical protein CHP01627 (InterPro:IPR006514); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF579) (TAIR:AT5G67210.1); Has 253 Blast hits to 252 proteins in 20 species: Archae - 0; Bacteria - 5; Metazoa - 0; Fungi - 0; Plants - 241; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410II07eggNOG:ENOG410YAEWEMBL:AC006920EMBL:AY087196EMBL:BT028994EMBL:CP002685EnsemblPlants:AT2G15440
EnsemblPlants:AT2G15440.1entrez:816036GeneID:816036GO:GO:0016021GO:GO:0045492Gramene:AT2G15440.1hmmpanther:PTHR31444
hmmpanther:PTHR31444:SF0HOGENOM:HOG000238795InterPro:IPR006514InterPro:IPR021148KEGG:ath:AT2G15440OMA:DESEYWIPfam:PF04669
PhylomeDB:Q9SJN8PIR:A84529Proteomes:UP000006548RefSeq:NP_565374.1TAIR:AT2G15440TIGRfam:TIGR01627TIGRFAMs:TIGR01627
TMHMM:TMhelixUniGene:At.64934UniProt:Q9SJN8
Coordinates (TAIR10) chr2:-:6743792..6744781
Molecular Weight (calculated) 36392.80 Da
IEP (calculated) 6.18
GRAVY (calculated) -0.12
Length 329 amino acids
Sequence (TAIR10)
(BLAST)
001: MKSNTNTNLI LFHHHSPLTS KSPSAVAAAN HHRFLFIFFL SFFTLLFSFS LFSSSIHSTT SSHSLSSSPS SSSLPPPVLA ALLHYTSSSP PNTSMSFLEL
101: STISNIIHSH GPACNLLIFG LTHESLLWRS INFQGRTVFV DESPYSVSKF EQSNPGVEAY EVVYSTKVSQ AKKLLGYYKT RPECRPVQNL LFSDCKLGIN
201: DLPNFVYEID WDVILIDGPR GYASDSPGRM APIFTSAVLA KSKDFGTKTK KTDVLVHEFG RKIERVYSEE FLCEENLIEV VGDLGHFVVA AAEERESYGD
301: GFCRNSTRLS ESFTAVSGGD EEKVGVDDE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)