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AT2G15290.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24872594 (2014): plastid plastid envelope plastid inner membrane
  • PMID:21896887 (2011): mitochondrion mitochondrial envelope mitochondrial outer membrane
  • PMID:21433285 (2011): plasma membrane
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:18431481 (2008): plastid plastid envelope
  • PMID:12938931 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : translocon at inner membrane of chloroplasts 21
Curator
Summary (TAIR10)
Encodes a protein located in the chloroplast inner envelope. The study of mutant defective in the gene product suggests that the protein is involved in the translocation of protein across the envelope membrane into the chloroplast stroma.
Computational
Description (TAIR10)
translocon at inner membrane of chloroplasts 21 (TIC21); FUNCTIONS IN: copper uptake transmembrane transporter activity, protein homodimerization activity, iron ion transmembrane transporter activity; INVOLVED IN: protein import into chloroplast stroma, cellular metal ion homeostasis; LOCATED IN: chloroplast, chloroplast inner membrane, chloroplast envelope, Tic complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3611 (InterPro:IPR022051); Has 312 Blast hits to 312 proteins in 84 species: Archae - 0; Bacteria - 154; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IK47eggNOG:ENOG4111Y51EMBL:AC007267EMBL:AY057510EMBL:AY065215EMBL:AY122931EMBL:CP002685
EnsemblPlants:AT2G15290EnsemblPlants:AT2G15290.1entrez:816018GeneID:816018Genevisible:Q9SHU7GO:GO:0006875GO:GO:0009507
GO:GO:0009706GO:GO:0009941GO:GO:0015088GO:GO:0016021GO:GO:0035434GO:GO:0042803GO:GO:0045037
Gramene:AT2G15290.1hmmpanther:PTHR34548hmmpanther:PTHR34548:SF2HOGENOM:HOG000238848InParanoid:Q9SHU7InterPro:IPR022051iPTMnet:Q9SHU7
KEGG:ath:AT2G15290OMA:ANPFYQGPaxDb:Q9SHU7Pfam:PF12263Pfam:Q9SHU7PhylomeDB:Q9SHU7PIR:B84527
PRIDE:Q9SHU7PRO:PR:Q9SHU7ProteinModelPortal:Q9SHU7Proteomes:UP000006548RefSeq:NP_565372.1STRING:3702.AT2G15290.1TAIR:AT2G15290
tair10-symbols:ATTIC21tair10-symbols:CIA5tair10-symbols:PIC1tair10-symbols:TIC21TMHMM:TMhelixUniGene:At.22376UniGene:At.40435
UniProt:Q9SHU7
Coordinates (TAIR10) chr2:-:6642512..6644011
Molecular Weight (calculated) 31278.00 Da
IEP (calculated) 10.81
GRAVY (calculated) 0.32
Length 296 amino acids
Sequence (TAIR10)
(BLAST)
001: MQSLLLPPAS SSGVSAVALR PGFQHSFNHQ SLSTRSLPLF NPLLLAPKKK TTISSYQSPP SLSVYGFQIG GSKPSFTPST VAFSYPTSPS SVPGDNEVDK
101: AKLAQVAKRL EKTSRYFKRL GSIGFWGQLV STVVAAVILS FSIVVTGKPT SPATFYATAS GIAAAFVSVF WSFGYIRLSE RLRRTSIDPA KAPPRADVVK
201: GLRSGIMVNI LGMGSALLGM QATVGFLVAK ALTTSANPFY QGVSQGYSPV LALDVFLVQA SANTLLSHFL GLVCSLELLR SVTVPNSESV VVPKVA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)