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AT2G15270.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1168 (InterPro:IPR009548); Has 1930 Blast hits to 1364 proteins in 219 species: Archae - 0; Bacteria - 44; Metazoa - 762; Fungi - 280; Plants - 96; Viruses - 3; Other Eukaryotes - 745 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111T1JeggNOG:KOG4055EMBL:AC007267EMBL:AY045800EMBL:AY079332EMBL:CP002685EnsemblPlants:AT2G15270
EnsemblPlants:AT2G15270.1entrez:816016GeneID:816016Gramene:AT2G15270.1hmmpanther:PTHR13507HOGENOM:HOG000153469IntAct:Q9SHU9
InterPro:IPR009548KEGG:ath:AT2G15270ncoils:CoilOMA:RMDIDYNPANTHER:PTHR13507Pfam:PF06658PhylomeDB:Q9SHU9
PIR:H84526PRO:PR:Q9SHU9Proteomes:UP000006548RefSeq:NP_565371.1STRING:3702.AT2G15270.1TAIR:AT2G15270UniGene:At.14556
UniProt:Q9SHU9
Coordinates (TAIR10) chr2:+:6637967..6639252
Molecular Weight (calculated) 22341.50 Da
IEP (calculated) 10.04
GRAVY (calculated) -1.26
Length 194 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSGKPKQGD TRLVVAATTA SALMEAKKAD HGGSSSIVEY KPPVMLEDEE DLEVKLRRIL ENVPVRVSNT SGSSAGSGSG DFHQYRQMRR REQDRLTRMD
101: IDYNKRLKMA EFTIRREEKQ KAAEEKTSKK RLKRQKKKQK KQEKKQKPNT TEEEVKQPRV GEISSDEGED EVEEESVLEP LRPMFNIKFQ ENRS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)