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AT2G15110.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function, DUF601
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function, DUF601; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF601 (InterPro:IPR006736); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF601 (TAIR:AT1G46696.1); Has 2365 Blast hits to 2015 proteins in 377 species: Archae - 30; Bacteria - 336; Metazoa - 940; Fungi - 220; Plants - 116; Viruses - 8; Other Eukaryotes - 715 (source: NCBI BLink).
Protein Annotations
EMBL:CP002685EnsemblPlants:AT2G15110EnsemblPlants:AT2G15110.1entrez:3768032GeneID:3768032Gramene:AT2G15110.1hmmpanther:PTHR31099
InParanoid:F4IHH0InterPro:IPR006736KEGG:ath:AT2G15110ncoils:CoilPaxDb:F4IHH0Pfam:PF04642PRIDE:F4IHH0
ProteinModelPortal:F4IHH0Proteomes:UP000006548RefSeq:NP_179115.2TAIR:AT2G15110UniGene:At.74529UniProt:F4IHH0
Coordinates (TAIR10) chr2:-:6554847..6557168
Molecular Weight (calculated) 65425.50 Da
IEP (calculated) 8.19
GRAVY (calculated) -0.76
Length 583 amino acids
Sequence (TAIR10)
(BLAST)
001: MPPRKVVREV FLIDGKFEKY KTSLSTSSRL LLLRGAHQIP HQIPLISPEP TVCPENPPPG HPSEEDRFSL SLNDLLQLYA VKKGRTKGTF FLSPRKGFRV
101: FDDFPDKDEQ WRKSYFFFPV NDLTYGNKTG LFVSEWAART DLGWESLTID RIRASGRRIR SRTDLAVSSP PFCPRIIDKA DMSLPSSRQT TNKASVSAGK
201: KPETPTSGSG KTIKDPAGKD SEKRAADKKR KQPEETNPSP PRSSRPRHEE KGAKLKGIVK EAPQNLVVLS SRESETCESE RRNVPLPAPP MTFADTMRTL
301: VPPGSAIAPF DEMKEVNKEN YLRFARKLGK LILEFNSVFC SHEDQLFDKD VEIESFKRSE DENAKAVEKA NKVMNRMKAA ELQVQKLEVN NIDLTAKLKA
401: GKNAYLDAIE KETQARADLR TCKEKMKKME EEQAEMIVAA RTDERRKVRA QFHDFSSKYG NFFKESEEVE TLKVRVAEAK ANRELLEEIE KGEIPDLSKE
501: LESVRADEEK FARHAAEPKT PRPDPTELTS LLADTPSEVA AESIPPAEVA IIDEGGSNKG STSEAGIAAM FPVDVEKDSG KTE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)