AT2G15042.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.929 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Leucine-rich repeat (LRR) family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Leucine-rich repeat (LRR) family protein; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: receptor like protein 34 (TAIR:AT3G11010.1); Has 56306 Blast hits to 17936 proteins in 777 species: Archae - 23; Bacteria - 1630; Metazoa - 5114; Fungi - 406; Plants - 45797; Viruses - 0; Other Eukaryotes - 3336 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:6510165..6512335 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 61367.30 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.82 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.24 | ||||||||||||||||||||||||||||||||
| Length | 543 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDGSLSQKLY RPPWTGRGSI VHHVAGGAYV WRTDGPISQE LDSAIGLVHQ FTIGYESLNE WSKATNGLRN QIRILAKAGK RRKLEYTVAG HRDVRDWVSQ 101: ILYCYRGLTC PDAVTWLVMD ATNFGLRESF QQHFHRFPKI NGTFILATIY ELFFWRQQQF HGKSSSFHMC IALSSNDLCD NKFNGSIPRC MGNFSSTLQA 201: LHLRKNHLSG VFPENISESL KSLDVGHNQL VGKLPRSLVR ISSLEVLNVE NNKINDTFPF WLSSLEELQV LVLRSNAFHG PMQQTRFPNL RIIDVSHNHF 301: NGTLPSDFFV NWTVMFLLGE NEDQFNGEYM GTSYYSDSIV VMNKGLEMEM VRILKIFTSV DFSRNKFEGE IPKSIGLLKE LHVLNLSSNT FTGHIPSSMG 401: KLRELESLDV AQNKLSGDIP QDLGDLSYLA YMNFSHNQLV GPLPGGTQFL TQNCSSFEEN AGHFGPSLEK VCDIHGKTMQ ESEMPGSEED EEEVISWIAA 501: TIGFIPGIAF GLMMGYILVC YKPEWFMNVF GKNKSRSTSS TTR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)