suba logo
AT2G15020.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
mitochondrion 0.959
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64190.1); Has 72 Blast hits to 72 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IENYeggNOG:ENOG410YB32EMBL:AC005957EMBL:AY081308EMBL:BT015920EMBL:CP002685EnsemblPlants:AT2G15020
EnsemblPlants:AT2G15020.1entrez:815991GeneID:815991Gramene:AT2G15020.1hmmpanther:PTHR31439hmmpanther:PTHR31439:SF4HOGENOM:HOG000240084
KEGG:ath:AT2G15020OMA:WICELPEPhylomeDB:Q9ZUK9PIR:A84524Proteomes:UP000006548RefSeq:NP_179106.1STRING:3702.AT2G15020.1
TAIR:AT2G15020UniGene:At.40472UniProt:Q9ZUK9
Coordinates (TAIR10) chr2:-:6491706..6493286
Molecular Weight (calculated) 59414.10 Da
IEP (calculated) 7.18
GRAVY (calculated) -0.22
Length 526 amino acids
Sequence (TAIR10)
(BLAST)
001: MDPWSWICEL PEDPEFSESD SHAVFQLAGD LTRSIKLRAE RTLGSDQESH SLTFTVVAEG FNLLKSSTIW VSNTCPLSSE KPFLPLVLQL LQELITRSPT
101: THDGACTKFE QLEIKPSPVS WVMDSHSPES FSSVFNLILL TRLFWLCVFD APSEVGSFFF QHLLGPHVNA LTCQHAPVLR TFLVSLGVDA ELCIVRAASY
201: ALSKWMISKE IGLGNLGLKQ FSSSLMPRHS LGFSYATEAH GLWILKGYFP ILSMNVTNNS SNEVHNKIVK FPFVEPKEAV LRYALSHQQA EILVQFEYSV
301: KFYENYIKVN ARVDNIRIHV SKLGFHKGGV GVENQIADCY SEERYFPSRV RVWLGPELGS SHVSGLSLGR STKNEERDIE VTRVLKGNFG KGKVAPRVKA
401: RARMATKRKV KDWRIEQESE GNAAVFDAVL YDRESGQEVT TVKPKPNQEG LKNVFTKSGG MVFGRDEYGD EVGWRVGREM EGSVLKWRLG GKIWLTYWPN
501: KLNTLFYETR CVEWCDEVDL PLLPTS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)