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AT2G14880.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:22797472 (2012): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : SWIB/MDM2 domain superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SWIB/MDM2 domain superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SWIB/MDM2 domain (InterPro:IPR003121), SWIB domain (InterPro:IPR019835); BEST Arabidopsis thaliana protein match is: SWIB/MDM2 domain superfamily protein (TAIR:AT4G34290.1); Has 1208 Blast hits to 1119 proteins in 254 species: Archae - 0; Bacteria - 214; Metazoa - 140; Fungi - 207; Plants - 389; Viruses - 11; Other Eukaryotes - 247 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5531eggNOG:KOG1946EMBL:AC005396EMBL:AF370580
EMBL:CP002685EnsemblPlants:AT2G14880EnsemblPlants:AT2G14880.1entrez:815977
Gene3D:1.10.245.10GeneID:815977Gramene:AT2G14880.1hmmpanther:PTHR13844
hmmpanther:PTHR13844:SF8HOGENOM:HOG000225318InterPro:IPR003121InterPro:IPR019835
KEGG:ath:AT2G14880OMA:QDIVELPPfam:PF02201PhylomeDB:O82326
PIR:E84522Proteomes:UP000006548RefSeq:NP_565366.1SMART:SM00151
SMR:O82326STRING:3702.AT2G14880.1SUPFAM:SSF47592TAIR:AT2G14880
UniGene:At.13059UniProt:O82326
Coordinates (TAIR10) chr2:-:6393686..6394841
Molecular Weight (calculated) 15903.40 Da
IEP (calculated) 10.58
GRAVY (calculated) -0.34
Length 141 amino acids
Sequence (TAIR10)
(BLAST)
001: MAVSSGTFST FLCIKTTSFR NPSTPLSSLR FASHPAAKLR LVRAVTSATE SSEPTATNKR VPRGIMKPRP VSPEMQDIVE LPEIARTQAL KRIWAYIKEH
101: DLQDPQNKRE ILCDEKLKKI FEGRDRVGFL EIAKLIGPHF L
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)