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AT2G14835.2
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.731
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410ZR2PeggNOG:KOG3970EMBL:AC004705EMBL:AF424609
EMBL:CP002685EnsemblPlants:AT2G14835EnsemblPlants:AT2G14835.1EnsemblPlants:AT2G14835.2
entrez:815972Gene3D:3.30.40.10GeneID:815972GO:GO:0008270
GO:GO:0009737GO:GO:0016021Gramene:AT2G14835.1Gramene:AT2G14835.2
hmmpanther:PTHR12981hmmpanther:PTHR12981:SF0InterPro:IPR001841InterPro:IPR013083
KEGG:ath:AT2G14835OMA:QWWSANAPfscan:PS50089PhylomeDB:Q944Q6
PRO:PR:Q944Q6PROSITE:PS50089Proteomes:UP000006548RefSeq:NP_565365.1
RefSeq:NP_973461.1STRING:3702.AT2G14835.1SUPFAM:SSF57850TAIR:AT2G14835
TMHMM:TMhelixUniGene:At.19850UniProt:Q944Q6
Coordinates (TAIR10) chr2:+:6367238..6370610
Molecular Weight (calculated) 37439.80 Da
IEP (calculated) 8.17
GRAVY (calculated) -0.26
Length 343 amino acids
Sequence (TAIR10)
(BLAST)
001: MVVCKCKKAT RLYCFVHKAP VCGECICFPE HQTCVVRTYS EWVIDGEYDQ PKCCQCQATF DEGAGHQVTR LGCLHAIHTS CLVSLIKSFP PHTAPAGYVC
101: PACSTPIWPP MMVKDAGSRL HALLREVITQ TGLEKNLLGN HPVSRSTESR SPPPAFASDA LINISSSSHT QEGNNLPDGY SVAGNGEYSK SAVSEIVEID
201: VPASAGSYMK SSSPGLAAAA ARKGVPAVDR QNSETLYYAD DEDGNRKKYS RRGPLRHKFL RALLPFWSSA LPTLPVTAPP RKDAAKADDG SEGRVRHQRS
301: SKMDIRKILI FIALIACMAT MGILYYRLAL QAIGQELPDE EQR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)