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AT2G14530.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.848
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : TRICHOME BIREFRINGENCE-LIKE 13
Curator
Summary (TAIR10)
Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
Computational
Description (TAIR10)
TRICHOME BIREFRINGENCE-LIKE 13 (TBL13); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF828) (TAIR:AT5G64470.2); Has 1334 Blast hits to 1311 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 1330; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IKJSeggNOG:ENOG4110DHZEMBL:AC006067EMBL:AY074875
EMBL:AY124844EMBL:CP002685EnsemblPlants:AT2G14530EnsemblPlants:AT2G14530.1
entrez:815940GeneID:815940Genevisible:Q9ZQR5GO:GO:0005794
GO:GO:0016021GO:GO:0016413GO:GO:0071554Gramene:AT2G14530.1
hmmpanther:PTHR32285hmmpanther:PTHR32285:SF12HOGENOM:HOG000238734InParanoid:Q9ZQR5
InterPro:IPR025846InterPro:IPR026057InterPro:IPR029962InterPro:IPR029968
KEGG:ath:AT2G14530ncoils:CoilOMA:KKWRPAGPANTHER:PTHR32285
PANTHER:PTHR32285:SF12PaxDb:Q9ZQR5Pfam:PF13839Pfam:PF14416
Pfam:Q9ZQR5PhylomeDB:Q9ZQR5PIR:C84518PRO:PR:Q9ZQR5
Proteomes:UP000006548RefSeq:NP_179059.1STRING:3702.AT2G14530.1TAIR:AT2G14530
tair10-symbols:TBL13TMHMM:TMhelixUniGene:At.43682UniProt:Q9ZQR5
Coordinates (TAIR10) chr2:+:6187484..6190137
Molecular Weight (calculated) 46464.40 Da
IEP (calculated) 9.65
GRAVY (calculated) -0.36
Length 412 amino acids
Sequence (TAIR10)
(BLAST)
001: MATTSHNKPS LFPLLSLLCF ISIFLLLSLS KRASLSSPKT HRSATVFPPK PDGSLSPLSA TCDFSEGSWI YDPNPRSTRY TSSCKEIFKG WNCIRNNKTN
101: GFEISNWRWK PKHCDLPSFD PLKFLQSHRN TNIGFVGDSL NRNMFVSLFC MLKSVTGELK KWRPAGADRG FTFSQYNLTI AYHRTNLLAR YGRWSANAKG
201: GELESLGFKE GYRVDVDIPD SSWAKASSFH DILILNTGHW WWAPSKFDPV KSPMLFFEGG RPILPPIPPA TGLDRVLNNM VNFVEKTKRP GGIIFFRTQS
301: PRHFEGGDWD QGGTCQRLQP LLPGKVEEFF SVGNNGTNVE VRLVNQHLYN SLKSRSAFHV LDITRMSEYR ADAHPAAAGG KNHDDCMHWC LPGLTDTWND
401: LFVATLHTIK AL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)