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AT2G13840.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.757
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Polymerase/histidinol phosphatase-like
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Polymerase/histidinol phosphatase-like; FUNCTIONS IN: DNA binding, DNA-directed DNA polymerase activity, catalytic activity; INVOLVED IN: DNA replication; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Polymerase/histidinol phosphatase-like (InterPro:IPR016195), Polymerase/histidinol phosphatase, N-terminal (InterPro:IPR003141), PHP, C-terminal (InterPro:IPR004013); Has 4358 Blast hits to 4353 proteins in 1589 species: Archae - 140; Bacteria - 3576; Metazoa - 0; Fungi - 2; Plants - 36; Viruses - 0; Other Eukaryotes - 604 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0613eggNOG:ENOG410IETGEMBL:AC006218EMBL:AC006436EMBL:CP002685EnsemblPlants:AT2G13840EnsemblPlants:AT2G13840.1
entrez:815867GeneID:815867GO:GO:0003677GO:GO:0003887GO:GO:0006260Gramene:AT2G13840.1hmmpanther:PTHR30007
hmmpanther:PTHR30007:SF19HOGENOM:HOG000239493InterPro:IPR003141InterPro:IPR004013InterPro:IPR016195KEGG:ath:AT2G13840KO:K07053
OMA:WEHVTRIPfam:PF02811PhylomeDB:Q9ZQI9PIR:C84511Proteomes:UP000006548RefSeq:NP_565360.1SMART:SM00481
SMR:Q9ZQI9SUPFAM:SSF89550TAIR:AT2G13840UniGene:At.26505UniProt:Q9ZQI9
Coordinates (TAIR10) chr2:-:5788616..5791057
Molecular Weight (calculated) 47840.40 Da
IEP (calculated) 9.24
GRAVY (calculated) -0.31
Length 434 amino acids
Sequence (TAIR10)
(BLAST)
001: MADDKKKRNK KKKRSTGNKR KMTTEQSEAF KSITDWLILG SSPSLSSSSD DFAVNINSGS LRCGEKVVFE LHSHSNRSDG FLSPSKVVER AYNNGVKVLS
101: LTDHDTMAGV PEAVEAGRRF GIKIIPGIEI STLFGLRDSG SEEPVHILAY YGTSGPALYD ELEDFLVKIR DGRFVRGREM VLKLNKLKIP LKWEHVTRIA
201: GKDVAPGRMH VARALLEAGY VENLRQAFTK YLHDGGPAYA TGTEPMAEEA VKLICKTGGV AVLAHPWALK NHVGIIRRLK DAGLHGVEVY RSDGKLEVFS
301: ELADTYNLLK LGGSDYHGKG GRNESELGSV NLPVTALQDF LNVGRPIWCE AIKATMRAFL DQPSDSNLSN ILRFDKARIL KGNSAWSCGK ELMDRCLAIW
401: LTSDERNSND FEALRLKLSF VPIMSNGTCV TVGP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)