AT2G13840.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.931 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Polymerase/histidinol phosphatase-like | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Polymerase/histidinol phosphatase-like; FUNCTIONS IN: DNA binding, DNA-directed DNA polymerase activity, catalytic activity; INVOLVED IN: DNA replication; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Polymerase/histidinol phosphatase-like (InterPro:IPR016195), Polymerase/histidinol phosphatase, N-terminal (InterPro:IPR003141), PHP, C-terminal (InterPro:IPR004013); Has 4358 Blast hits to 4353 proteins in 1589 species: Archae - 140; Bacteria - 3576; Metazoa - 0; Fungi - 2; Plants - 36; Viruses - 0; Other Eukaryotes - 604 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:5788616..5791057 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 47840.40 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.24 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.31 | ||||||||||||||||||||||||||||||||||||
| Length | 434 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MADDKKKRNK KKKRSTGNKR KMTTEQSEAF KSITDWLILG SSPSLSSSSD DFAVNINSGS LRCGEKVVFE LHSHSNRSDG FLSPSKVVER AYNNGVKVLS 101: LTDHDTMAGV PEAVEAGRRF GIKIIPGIEI STLFGLRDSG SEEPVHILAY YGTSGPALYD ELEDFLVKIR DGRFVRGREM VLKLNKLKIP LKWEHVTRIA 201: GKDVAPGRMH VARALLEAGY VENLRQAFTK YLHDGGPAYA TGTEPMAEEA VKLICKTGGV AVLAHPWALK NHVGIIRRLK DAGLHGVEVY RSDGKLEVFS 301: ELADTYNLLK LGGSDYHGKG GRNESELGSV NLPVTALQDF LNVGRPIWCE AIKATMRAFL DQPSDSNLSN ILRFDKARIL KGNSAWSCGK ELMDRCLAIW 401: LTSDERNSND FEALRLKLSF VPIMSNGTCV TVGP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)