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AT2G13820.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Predictors External Curations
AmiGO : plasma membrane 14517339
AmiGO : plasma membrane 17317660
SwissProt : extracellular 16381842
SwissProt : plasma membrane 16381842
TAIR : plasma membrane 17317660
TAIR : plasma membrane 14517339
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: anchored to plasma membrane, plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/Par allergen (InterPro:IPR000528), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT5G64080.1); Has 1111 Blast hits to 1107 proteins in 71 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 4; Plants - 1105; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:1226eggNOG:ENOG410J0Q5eggNOG:ENOG410Z3NPEMBL:AC006218EMBL:AC006436EMBL:AK227370EMBL:AY086354
EMBL:BT003062EMBL:CP002685EnsemblPlants:AT2G13820EnsemblPlants:AT2G13820.1entrez:815865GeneID:815865Genevisible:Q9ZQI8
GO:GO:0005576GO:GO:0005886GO:GO:0006869GO:GO:0008289GO:GO:0046658hmmpanther:PTHR33044hmmpanther:PTHR33044:SF27
HOGENOM:HOG000083642InParanoid:Q9ZQI8InterPro:IPR000528InterPro:IPR016140iPTMnet:Q9ZQI8KEGG:ath:AT2G13820OMA:GPECLCE
PaxDb:Q9ZQI8Pfam:PF14368Pfam:Q9ZQI8PhylomeDB:Q9ZQI8PIR:B84511PRIDE:Q9ZQI8PRINTS:PR00382
PRO:PR:Q9ZQI8ProteinModelPortal:Q9ZQI8Proteomes:UP000006548RefSeq:NP_179002.1RefSeq:NP_973450.1SMART:SM00499SMR:Q9ZQI8
STRING:3702.AT2G13820.1SUPFAM:SSF47699TAIR:AT2G13820UniGene:At.13581UniProt:Q9ZQI8
Coordinates (TAIR10) chr2:-:5774295..5776279
Molecular Weight (calculated) 16817.30 Da
IEP (calculated) 6.98
GRAVY (calculated) 0.62
Length 169 amino acids
Sequence (TAIR10)
(BLAST)
001: MAYATILMIF SVVALMSGER AHAAVDCSSL ILNMADCLSF VTSGSTVVKP EGTCCSGLKT VVRTGPECLC EAFKNSGSLG LTLDLSKAAS LPSVCKVAAP
101: PSARCGLSVS GDPPATAPGL SPTAGAGAPA LSSGANAATP VSSPRSSDAS LLSVSFAFVI FMALISSFY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)