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AT2G13690.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.891
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : PRLI-interacting factor, putative
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
PRLI-interacting factor, putative; BEST Arabidopsis thaliana protein match is: BTB/POZ domain-containing protein (TAIR:AT5G60050.1); Has 259 Blast hits to 259 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 259; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IFJNeggNOG:ENOG410Y9NAEMBL:AC006436EMBL:AC007063EMBL:AF315734EMBL:AK117606EMBL:AY085733
EMBL:BT029302EMBL:CP002685EnsemblPlants:AT2G13690EnsemblPlants:AT2G13690.1entrez:815853GeneID:815853Genevisible:Q9SKH2
GO:GO:0016567Gramene:AT2G13690.1hmmpanther:PTHR31060hmmpanther:PTHR31060:SF2HOGENOM:HOG000082584InParanoid:Q9SKH2KEGG:ath:AT2G13690
OMA:HIECTADPaxDb:Q9SKH2Pfam:Q9SKH2PhylomeDB:Q9SKH2PIR:H84509PRIDE:Q9SKH2PRO:PR:Q9SKH2
ProteinModelPortal:Q9SKH2Proteomes:UP000006548RefSeq:NP_565358.1TAIR:AT2G13690UniGene:At.13847UniPathway:UPA00143UniProt:Q9SKH2
Coordinates (TAIR10) chr2:-:5706704..5708895
Molecular Weight (calculated) 61389.40 Da
IEP (calculated) 5.96
GRAVY (calculated) -0.37
Length 544 amino acids
Sequence (TAIR10)
(BLAST)
001: MTMGDSDLRK PTNFGTGHLS RRRSWCCSFA VPPASPDTRS ISSRNHIPAK SQQQRPKLVP CSPQSSKSAL NIVNRIDPRR ILSPGRVSPI DSDPTVTTMQ
101: ETETTQEEED DAVVVDSTPN LRSESFRAPK IEVTGSGLSE GYDARLSLKG RNGGGVLVLE LSLEVLAANS DVFSGLIAEE KKCSSSSSSL GLKNTCRIEV
201: CDVENLGVFR ETVELMFEES NVIIKKFMTM GVYRAIDVLE VAAGIKFSRA VLSCLKYLEA VPWTEDEEEK LRRLLGIYSF DDDAVSEILA RFNSNETENL
301: QDSLSKKLVW SITSCSDVNP RNELKSLVKG LLCKSSVYEK EQPEINKEDI YRAGKCCVDS LAKLFEEGSS SSSSKKEKPL IESISREVEN INWLLEIMID
401: REIAEEFVEI WGKQRRLVEM HERVSPMVRY EVSRVTGAIF IAMGKRRVQC GGEARAGLVE AWFKPMLVDF GWLQRCKKGL DMREVEEGMG QTLLTLPVKE
501: QYQVFMEWFR WFSKHGTECP NLSKAFQIWW RRSFLRGVES STCR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)