AT2G13620.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 0.547 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : cation/hydrogen exchanger 15 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
member of Putative Na+/H+ antiporter family | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
cation/hydrogen exchanger 15 (CHX15); FUNCTIONS IN: monovalent cation:hydrogen antiporter activity, sodium:hydrogen antiporter activity; INVOLVED IN: cation transport; LOCATED IN: integral to membrane; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153); BEST Arabidopsis thaliana protein match is: cation/H+ exchanger 19 (TAIR:AT3G17630.1); Has 10260 Blast hits to 10223 proteins in 2141 species: Archae - 371; Bacteria - 8129; Metazoa - 51; Fungi - 171; Plants - 694; Viruses - 0; Other Eukaryotes - 844 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:5678006..5680621 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 89864.80 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.00 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.36 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 821 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MATSEEPSTD ASIICYAPSM ITTNGVWQGD NPLDFSLPLF VLQLTLVVVV TRFFVFILKP FRQPRVISEI LGGIVLGPSV LGRSTKFAHT IFPQRSVMVL 101: ETMANVGLLY FLFLVGVEMD IMVVRKTGKR ALTIAIGGMV LPFLIGAAFS FSMHRSEDHL GQGTYILFLG VALSVTAFPV LARILAELKL INTEIGRISM 201: SAALVNDMFA WILLALAIAL AESDKTSFAS LWVMISSAVF IAVCVFVVRP GIAWIIRKTP EGENFSEFHI CLILTGVMIS GFITDAIGTH SVFGAFVFGL 301: VIPNGPLGLT LIEKLEDFVS GLLLPLFFAI SGLKTNIAAI QGPATWLTLF LVIFLACAGK VIGTVIVAFF HGMPVREGIT LGLLLNTKGL VEMIVLNVGK 401: DQKVLDDETF ATMVLVALVM TGVITPIVTI LYKPVKKSVS YKRRTIQQTK PDSELRVLVC VHTPRNVPTI INLLEASHPT KRSPICIYVL HLVELTGRAS 501: AMLIVHNTRK SGRPALNRTQ AQSDHIINAF ENYEQHAAFV AVQPLTAISP YSTMHEDVCS LAEDKRVSFI IIPFHKQQTV DGGMESTNPA YRLVNQNLLE 601: NSPCSVGILV DRGLNGATRL NSNTVSLQVA VLFFGGPDDR EALAYAWRMA QHPGITLTVL RFIHDEDEAD TASTRATNDS DLKIPKMDHR KQRQLDDDYI 701: NLFRAENAEY ESIVYIEKLV SNGEETVAAV RSMDSSHDLF IVGRGEGMSS PLTAGLTDWS ECPELGAIGD LLASSDFAAT VSVLVVQQYV GSWAQEDDMD 801: FPESPVHSHE TKVTYGLENP R |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)