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AT2G13600.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G22070.1); Has 46660 Blast hits to 13875 proteins in 226 species: Archae - 0; Bacteria - 4; Metazoa - 74; Fungi - 58; Plants - 45878; Viruses - 0; Other Eukaryotes - 646 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC007063EMBL:CP002685
EnsemblPlants:AT2G13600EnsemblPlants:AT2G13600.1entrez:815845Gene3D:1.25.40.10
GeneID:815845Genevisible:Q9SIT7GO:GO:0005739GO:GO:0010182
GO:GO:0080156Gramene:AT2G13600.1hmmpanther:PTHR24015hmmpanther:PTHR24015:SF900
HOGENOM:HOG000237570InParanoid:Q9SIT7InterPro:IPR002885InterPro:IPR011990
KEGG:ath:AT2G13600OMA:FLAAMHAPaxDb:Q9SIT7Pfam:PF01535
Pfam:PF13041Pfam:Q9SIT7Pfscan:PS51375PhylomeDB:Q9SIT7
PIR:H84508PRIDE:Q9SIT7PRO:PR:Q9SIT7PROSITE:PS51375
ProteinModelPortal:Q9SIT7Proteomes:UP000006548RefSeq:NP_178983.1SMR:Q9SIT7
STRING:3702.AT2G13600.1TAIR:AT2G13600TIGRfam:TIGR00756TIGRFAMs:TIGR00756
UniGene:At.52726UniProt:Q9SIT7
Coordinates (TAIR10) chr2:+:5671493..5673586
Molecular Weight (calculated) 78095.00 Da
IEP (calculated) 5.71
GRAVY (calculated) -0.10
Length 697 amino acids
Sequence (TAIR10)
(BLAST)
001: MATKSFLKLA ADLSSFTDSS PFAKLLDSCI KSKLSAIYVR YVHASVIKSG FSNEIFIQNR LIDAYSKCGS LEDGRQVFDK MPQRNIYTWN SVVTGLTKLG
101: FLDEADSLFR SMPERDQCTW NSMVSGFAQH DRCEEALCYF AMMHKEGFVL NEYSFASVLS ACSGLNDMNK GVQVHSLIAK SPFLSDVYIG SALVDMYSKC
201: GNVNDAQRVF DEMGDRNVVS WNSLITCFEQ NGPAVEALDV FQMMLESRVE PDEVTLASVI SACASLSAIK VGQEVHGRVV KNDKLRNDII LSNAFVDMYA
301: KCSRIKEARF IFDSMPIRNV IAETSMISGY AMAASTKAAR LMFTKMAERN VVSWNALIAG YTQNGENEEA LSLFCLLKRE SVCPTHYSFA NILKACADLA
401: ELHLGMQAHV HVLKHGFKFQ SGEEDDIFVG NSLIDMYVKC GCVEEGYLVF RKMMERDCVS WNAMIIGFAQ NGYGNEALEL FREMLESGEK PDHITMIGVL
501: SACGHAGFVE EGRHYFSSMT RDFGVAPLRD HYTCMVDLLG RAGFLEEAKS MIEEMPMQPD SVIWGSLLAA CKVHRNITLG KYVAEKLLEV EPSNSGPYVL
601: LSNMYAELGK WEDVMNVRKS MRKEGVTKQP GCSWIKIQGH DHVFMVKDKS HPRKKQIHSL LDILIAEMRP EQDHTEIGSL SSEEMDYSSN LLWDNAM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)