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AT2G13540.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : ARM repeat superfamily protein
Curator
Summary (TAIR10)
Encodes a nuclear cap-binding protein that forms a heterodimeric complex with CBP20 and is involved in ABA signaling and flowering. Mutants are early flowering and exhibit hypersensitive response to ABA in germination inhibition.Loss of ABH1 function results in abnormal processing of mRNAs for several important floral regulators (FLC, CO, FLM). Analysis of loss of function mutations suggests a role in pri-miRNA processing and mRNA splicing. Note that two different mutant alleles were given the same name abh1-7 (Kuhn et al 2007; Kim et al 2008). To avoid confusion, abh1-7 described in Kim et al (2008) has been renamed abh1-107 (other names: ensalada-1, ens-1).
Computational
Description (TAIR10)
ABA HYPERSENSITIVE 1 (ABH1); CONTAINS InterPro DOMAIN/s: MIF4G-like, type 2 (InterPro:IPR015174), MIF4G-like, type 1 (InterPro:IPR015172), Armadillo-type fold (InterPro:IPR016024), MIF4G-like, type 3 (InterPro:IPR003890), MIF4-like, type 1/2/3 (InterPro:IPR016021); Has 514 Blast hits to 510 proteins in 229 species: Archae - 0; Bacteria - 96; Metazoa - 188; Fungi - 131; Plants - 55; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).
Protein Annotations
BioGrid:1201eggNOG:ENOG410XR7HeggNOG:KOG1104EMBL:AC007063EMBL:AF268377EMBL:AF272891EMBL:AY064960
EMBL:BT000650EMBL:CP002685EnsemblPlants:AT2G13540EnsemblPlants:AT2G13540.1entrez:815840Gene3D:1.25.40.180GeneID:815840
Genevisible:Q9SIU2GO:GO:0000339GO:GO:0000394GO:GO:0005634GO:GO:0005737GO:GO:0005846GO:GO:0006370
GO:GO:0009737GO:GO:0031053GO:GO:0045292GO:GO:0048574GO:GO:0051028Gramene:AT2G13540.1hmmpanther:PTHR12412
HOGENOM:HOG000029533InParanoid:Q9SIU2IntAct:Q9SIU2InterPro:IPR003890InterPro:IPR015172InterPro:IPR015174InterPro:IPR016021
InterPro:IPR016024InterPro:IPR027159KEGG:ath:AT2G13540KO:K12882ncoils:CoilOMA:IMLLTEHPANTHER:PTHR12412
PaxDb:Q9SIU2Pfam:PF02854Pfam:PF09088Pfam:PF09090Pfam:Q9SIU2PhylomeDB:Q9SIU2PIR:C84508
PRIDE:Q9SIU2PRO:PR:Q9SIU2ProteinModelPortal:Q9SIU2Proteomes:UP000006548Reactome:R-ATH-112382Reactome:R-ATH-113418Reactome:R-ATH-674695
Reactome:R-ATH-72086Reactome:R-ATH-72163Reactome:R-ATH-72165Reactome:R-ATH-72187Reactome:R-ATH-72203Reactome:R-ATH-77595Reactome:R-ATH-975956
Reactome:R-ATH-975957RefSeq:NP_565356.1SMART:SM00543SMR:Q9SIU2STRING:3702.AT2G13540.1SUPFAM:SSF48371TAIR:AT2G13540
tair10-symbols:ABH1tair10-symbols:ATCBP80tair10-symbols:CBP80tair10-symbols:ENSUniGene:At.25306UniProt:Q9SIU2
Coordinates (TAIR10) chr2:+:5637053..5642813
Molecular Weight (calculated) 96553.00 Da
IEP (calculated) 5.13
GRAVY (calculated) -0.20
Length 848 amino acids
Sequence (TAIR10)
(BLAST)
001: MSNWKTLLLR IGEKGPEYGT SSDYKDHIET CFGVIRREIE RSGDQVLPFL LQCAEQLPHK IPLYGTLIGL LNLENEDFVQ KLVESVHANF QVALDSGNCN
101: SIRILLRFMT SLLCSKVIQP ASLIVVFETL LSSAATTVDE EKGNPSWQPQ ADFYVICILS SLPWGGSELA EQVPDEIERV LVGIQAYLSI RKNSSTSGLN
201: FFHNGEFESS LAEKDFVEDL LDRIQSLASN GWKLESVPRP HLSFEAQLVA GKFHELRPIK CMEQPSPPSD HSRAYSGKQK HDALTRYPQR IRRLNIFPAN
301: KMEDVQPIDR FVVEEYLLDV LFYLNGCRKE CASYMANLPV TFRYEYLMAE TLFSQILLLP QPPFKTLYYT LVIMDLCKAL PGAFPAVVAG AVRALFEKIS
401: DLDMESRTRL ILWFSHHLSN FQFIWPWEEW AFVLDLPKWA PKRVFVQEIL QREVRLSYWD KIKQSIENAT ALEELLPPKA GPNFMYSLEE GKEKTEEQQL
501: SAELSRKVKE KQTARDMIVW IEETIYPVHG FEVTLTIVVQ TLLDIGSKSF THLVTVLERY GQVFSKLCPD NDKQVMLLSQ VSTYWKNNVQ MTAVAIDRMM
601: GYRLVSNQAI VRWVFSPENV DQFHVSDQPW EILGNALNKT YNRISDLRKD ISNITKNVLV AEKASANARV ELEAAESKLS LVEGEPVLGE NPAKMKRLKS
701: TVEKTGEAEL SLRESLEAKE ALLNRALSET EVLLLLLFQS FLGVLKERLP DPTKVRSVQD LKSIGAEDDK PSAMDVDSEN GNPKKSCEVG EREQWCLSTL
801: GYLTAFTRQY ASEIWPHMEK LESEVFSGED VHPLFLQAIS SALQFPLH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)